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Oryza sativa Japonica Group strain:Nipponbare

ABSTRACT: Comparison of spontaneous and somaclonal mutations of rice

PROVIDER: PRJDB5497 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	DRR086972_1.fastq.gz	Fastqsanger.gz
	DRR086972_2.fastq.gz	Fastqsanger.gz
	DRR086973_1.fastq.gz	Fastqsanger.gz
	DRR086973_2.fastq.gz	Fastqsanger.gz
	DRR086974_1.fastq.gz	Fastqsanger.gz

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Oryza sativa Japonica Group transcriptome sequencing

Project description:Phosphate starvation/sufficient rice seedling, root or shoot Pi-starvation or Pi-sufficient stresses responsible rice genes, including previously unannotated genes were identified by Illumina mRNA-seq technology. 53 million reads from Pi-starvation or Pi-sufficient root or shoot tissues were uniquely mapped to the rice genome, and these included 40574 RAP3 transcripts in root and 39748 RAP3 transcripts in shoot. We compared our mRNA-seq expression data with that from Rice 44K oligomicroarray, and about 95.5% (root) and 95.4% (shoot) transcripts supported by the array were confirmed expression both by the array and by mRNA-seq, Moreover, 11888 (root) and 11098 (shoot) RAP genes which were not supported by array, were evidenced expression with mRNA-seq. Furthermore, we discovered 8590 (root) and 8193 (shoot) previously unannotated transcripts upon Pi-starvation and/or Pi-sufficient.

2012-01-06 | E-MTAB-4302 | biostudies-arrayexpress

Oryza sativa Japonica Group

Project description:Analysis of somaclonal variation on the genome of regenerated rice

| PRJDB2407 | ENA