Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Streptomyces olivochromogenes strain:NBRC 3561

ABSTRACT: Draft genome sequence of Streptomyces olivochromogenes NBRC 3561

PROVIDER: PRJDB5702 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	DRR091156_1.fastq.gz	Fastqsanger.gz
	DRR091156_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 3 of 3

Similar Datasets

Transcriptome analysis of Bacillus subtilis NBRC 16449 grown on surface of boiled soybeans under the similar condition to production of Japanese traditional soybean-fermented food "natto"

Project description:Purpose:The goals of this study are to clarify the B. subtilis NBRC 16449 response to soybeans. Methods: B. subtilis NBRC 16449 cells were aerobically cultured in liquid LB, LB solidified with agar, or on surface of boiled soybeans to logarithmic growth phase. Total RNAs were extracted from bacterial cells by Hot-Phenol method. Samples for RNA-seq were prepared according to Illmina protocol available from the manufacture. The sequence reads that passed quality filters were analyzed at the transcript isoform level with bowtie v0.11.2. Results: Using an optimized data analysis workflow, we mapped around 15 million sequence reads per sample to the whole genome of B. subtilis BEST195 and identified 4271 transcripts in B. subtilis NBRC 16449 with Bowtie aligner. Read count per genome was extracted from known gene annotations with HTSeq program. Compared the transcriptomes of B. subtilis NBRC 16449 grown on LB solidified with agar to that grown on surface of boiled soybeans, about 5% of genes showed the different expression levels.

2020-11-02 | GSE109523 | GEO

Expression analysis of Gluconacetobacter xylinus NBRC 3288 delta-fnrG mutant

Project description:Investigation of whole genome gene expression level changes in a Gluconacetobacter xylinus NBRC 3288 delta-fnrG mutant, compared to the wild-type strain.

2021-07-16 | GSE41775 | GEO

Streptomyces luteocolor strain:NBRC 13826

Project description:Streptomyces luteocolor NBRC 13826 genome project

| PRJDB3578 | ENA

Streptomyces olivoreticuli strain:NBRC 12896

Project description:Streptomyces olivoreticuli NBRC 12896 genome project

| PRJDB3575 | ENA

Streptomyces netropsis strain:NBRC 15815

Project description:Streptomyces netropsis NBRC 15815 genome project

| PRJDB3576 | ENA

Streptomyces angustmyceticus strain:NBRC 3934

Project description:Streptomyces angustmyceticus NBRC 3934 genome sequencing project