Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Marine plankton metagenome

ABSTRACT: Zooplankton communities in the coastal water of northeastern Hokkaido

PROVIDER: PRJDB5770 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR092511_1.fastq.gz	Fastqsanger.gz
	DRR092511_2.fastq.gz	Fastqsanger.gz
	DRR092512_1.fastq.gz	Fastqsanger.gz
	DRR092512_2.fastq.gz	Fastqsanger.gz
	DRR092513_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 202

Similar Datasets

marine plankton metagenome

Project description:Phytoplankton communities in the shallow eastern Mediterranean coastal waters

| PRJNA670617 | ENA

marine plankton metagenome

Project description:Zooplankton diversity analyses of samples collected from Okinawa coral reefs.

| PRJDB9097 | ENA

marine plankton metagenome

Project description:RNA virosphere associated with a marine zooplankton community in the subtropical western North Pacific

| PRJDB9590 | ENA

A microarray for assessing transcription from pelagic marine microbial taxa

Project description:Metagenomic approaches have revealed unprecedented genetic diversity within microbial communities across vast expanses of the world’s oceans. Linking this genetic diversity with key metabolic and cellular activities of microbial assemblages is a fundamental challenge. Here we report on a collaborative effort to design MicroTOOLs (Microbiological Targets for Ocean Observing Laboratories), a high-density oligonucleotide microarray that targets functional genes of diverse taxa in pelagic and coastal marine microbial communities. MicroTOOLs integrates nucleotide sequence information from disparate data types: genomes, PCR-amplicons, metagenomes, and metatranscriptomes. It targets 19 400 unique sequences over 145 different genes that are relevant to stress responses and microbial metabolism across the three domains of life and viruses. MicroTOOLs was used in a proof-of-concept experiment that compared the functional responses of microbial communities following Fe and P enrichments of surface water samples from the North Pacific Subtropical Gyre. We detected transcription of 68% of the gene targets across major taxonomic groups, and the pattern of transcription indicated relief from Fe limitation and transition to N limitation in some taxa. Prochlorococcus (eHLI), Synechococcus (sub-cluster 5.3) and Alphaproteobacteria SAR11 clade (HIMB59) showed the strongest responses to the Fe enrichment. In addition, members of uncharacterized lineages also responded. The MicroTOOLs microarray provides a robust tool for comprehensive characterization of major functional groups of microbes in the open ocean, and the design can be easily amended for specific environments and research questions.

2013-03-07 | GSE44448 | GEO

marine plankton metagenome

Project description:Microbial diversity at a coastal time-series station in the Gulf of Maine

| PRJNA420516 | ENA

marine plankton metagenome

Project description:Characteristics of eukaryotic plankton community in the Coastal Waters of Rongcheng by Illumina sequencing

| PRJNA354211 | ENA

marine plankton metagenome

Project description:Responses of the coastal prokaryotic community to phytoplankton-derived intra- and extra-cellular organic matters

| PRJDB9080 | ENA

marine plankton metagenome

Project description:Amplicon-Based Illumina Sequencing Reveals High Diversity of Phytoplankton in the Coastal Waters of Qinhuangdao

| PRJNA353662 | ENA

marine plankton metagenome

Project description:Effect of viral infection to the raphidophycean alga Heterosigma akashiwo on dynamics of a coastal prokaryotic community

| PRJDB18787 | ENA

uncultured marine eukaryote

Project description:Metabarcoding of zooplankton from Norpac net samples in Mombetsu, Hokkaido Japan

| PRJDB11340 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data