Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Solanum lycopersicum

ABSTRACT: Tomato RNA-seq analysis

PROVIDER: PRJDB5790 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR092895.fastq.gz	Fastqsanger.gz
	DRR092896.fastq.gz	Fastqsanger.gz
	DRR092897.fastq.gz	Fastqsanger.gz
	DRR092898.fastq.gz	Fastqsanger.gz
	DRR092899.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 27

Similar Datasets

Solanum lycopersicum Transcriptome or Gene expression

Project description:To characterize the PTI response of tomato and the effect of the delivery of a subset of effectors, we performed an RNA-seq analysis of tomato Rio Grande prf3 leaves challenged with either the flgII-28 peptide or the following bacterial strains: Agrobacterium tumefaciens GV2260, Pseudomonas fluorescens 55, Pseudomonas putida KT2440, Pseudomonas syringae pv. tomato (Pst) DC3000, Pst DC3000 deltahrcQ-U deltafliC and Pst DC3000 deltaavrPto deltaavrPtoB. NOTE: Samples in SRA were assigned the same sample accession. This is incorrect as there are different samples, hence âSource Nameâ was replaced with new values. Comment[ENA_SAMPLE] contains the original SRA sample accessions.

2013-08-21 | E-MTAB-4789 | biostudies-arrayexpress

iSB09 elicits ABA-responsive gene expression in Solanum lycopersicum seedlings

Project description:To compare the genome-wide transcriptional effect of ABA and iSB09 in tomato plants, we performed RNA-seq analysis of mock-, 10 uM ABA- or 20 uM iSB09-treated plants. Differential gene expression analysis between mock- and ABA-treated or iSB09-treated seedlings was done with DESeq2 and genes with an absolute value of log2 fold change (log2FC) > 1 or (log2FC) < -1 and p-adjusted value (padj) < 0.05 were selected. iSB09 upregulated and downregulated genes represent a subset of the ABA-responsive genes, which reflects the activation of PYL1-like and PYL4-like ABA receptors in tomato seedlings.

2024-07-22 | GSE256238 | GEO

Solanum lycopersicum

Project description:RNA-Seq of miR482b-overexpressing tomato

| PRJNA479930 | ENA

Solanum lycopersicum

Project description:Tomato MYC2 ChIP- and RNA-seq data

| PRJNA375842 | ENA

Solanum lycopersicum

Project description:RNA-seq analysis reveals the role of red light in resistance against Pseudomonas syringae pv. tomato DC3000 in tomato plants

| PRJNA270083 | ENA

High-throughput pyrosequencing of endogenous small RNAs from Solanum lycopersicum leaf and fruit

Project description:Comparison of the endogenous small RNA content of tomato leaves and fruits.

2008-08-22 | GSE12081 | GEO

RNA-seq of Solanum Lycopersicum and Solanum Pennellii parents and crosses up to the F4 generation

Project description:This study investigates changes in gene expression among 2 Tomato species and their hybrids. This was used to investigate changes in gene (small-RNA-Seq data in separate submission) and sRNA expression after hybridisation.

2022-04-25 | E-MTAB-10660 | biostudies-arrayexpress

Solanum lycopersicum

Project description:Solanum lycopersicoides introgression lines of cultivated tomato RNA-seq data

| PRJNA526255 | ENA

Solanum lycopersicum

Project description:RNA seq analysis of pathogen-induced transcriptome changes in tomato plants overexpressing the Arabidopsis ELP4 gene

| PRJNA382680 | ENA

smallRNA-seq of Solanum Lycopersicum and Solanum Pennellii parents and crosses up to the F4 generation.

Project description:This study investigates small-RNA populations among 2 Tomato species and their hybrids. This was used to investigate changes in gene (RNA-Seq data in separate submission) as well as sRNA expression relative to the corresponding parent and whether gene transcription changes would be due to changes in the sRNAs levels.

2022-04-25 | E-MTAB-10613 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data