Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Riverine metagenome

ABSTRACT: Tamagawa river microbiome

PROVIDER: PRJDB5936 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR097707_1.fastq.gz	Fastqsanger.gz
	DRR097707_2.fastq.gz	Fastqsanger.gz
	DRR097708_1.fastq.gz	Fastqsanger.gz
	DRR097708_2.fastq.gz	Fastqsanger.gz
	DRR097709_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 76

Similar Datasets

Impact of sulfamethoxazole on a riverine microbiome

Project description:Freshwater environments such as rivers receive effluent discharges from wastewater treatment plants, representing a potential hotspot for antibiotic resistance genes (ARGs). These effluents also contain low levels of different antimicrobials including biocides and antibiotics such as sulfonamides that can be frequently detected in rivers. The impact of such exposure on ARG prevalence and microbial diversity of riverine environment is unknown, so the aim of this study was to investigate the release of a sub-lethal concentration (<4 g L-1) of the sulfonamide compound sulfamethoxazole (SMX) on the river bacterial microbiome using a microflume system. This system was a semi-natural in-vitro microflume using river water (30 L) and sediment, with circulation to mimic river flow. A combination of ‘omics’ approaches were conducted to study the impact of SMX exposure on the microbiomes within the microflumes. Metaproteomics did not show differences in ARGs expression with SMX exposure in water.

2021-07-06 | PXD023822 | Pride

riverine metagenome

Project description:Peri-urban river

| PRJNA305482 | ENA

riverine metagenome

Project description:Polluted river water Metagenome

| PRJNA384867 | ENA

riverine metagenome

Project description:River water Genome sequencing

| PRJNA317488 | ENA

riverine metagenome

Project description:Mekong River Raw sequence reads