Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Aegilops umbellulata

ABSTRACT: RNA-sequencing of the wild wheat related species Aegilops umbellulata

PROVIDER: PRJDB6583 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR119232_1.fastq.gz	Fastqsanger.gz
	DRR119232_2.fastq.gz	Fastqsanger.gz
	DRR119233_1.fastq.gz	Fastqsanger.gz
	DRR119233_2.fastq.gz	Fastqsanger.gz
	DRR119234_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 24

Similar Datasets

Aegilops umbellulata

Project description:Aegilops umbellulata Genome sequencing

| PRJNA1114735 | ENA

Expression profiling of grass-clump dwarf in syntheitic hexaploids from triploid hybrids crossed between tetraploid wheat and Aegilops umbellulata.

Project description:We have employed whole genome microarray expression profiling as a discovery platform to identify genes to alter the transcript accumulation levels in a grass-clump dwarf line, which is a synthetic hexaploid line from triploid hybrids crossed between tetraploid wheat (Triticum turgidum ssp. durum cv. Langdon) and a diploid wheat relative Aegilops umbellulata (KU-4052). Up-regulation of metabolic and catabolic processes-related genes for cell wall-associated molecules was observed, and down-regulation of wheat APETALA1-like MADS-box genes, considered to act as flowering promoters, was found in the grass-clump dwarf line. Unusual expression of the branching-related SPLs and flowering time regulation-related MADS-box genes could explain the grass-clump dwarf phenotype.

2017-01-24 | GSE93969 | GEO

Aegilops umbellulata

Project description:Aegilops umbellulata Map

| PRJNA41703 | ENA

Aegilops umbellulata

Project description:RNA-seq of Aegilops umbellulata population

| PRJDB17120 | ENA

Aegilops umbellulata

Project description:Aegilops umbellulata Organism overview

| PRJNA16853 | ENA

Aegilops umbellulata

Project description:Aegilops umbellulata Genome sequencing and assembly

| PRJNA872505 | ENA

Expression profiling of severe growth abortion (SGA) in triploid hybrids crossed between tetraploid wheat and Aegilops umbellulata.

Project description:We have employed whole genome microarray expression profiling as a discovery platform to identify genes to alter the transcript accumulation levels in SGA plants, which are triploid hybrids crossed between tetraploid wheat and a diploid wheat relative Aegilops umbellulata. Of the up-regulated genes, cell death and carboxy-lyase activity-related genes were the most frequently found in crown tissues of SGA plants. On the other hand, photosynthesis-related genes were highly down-regulated in crown tissues of SGA plants. In addition, transcript accumulation levels of shoot apical meristem (SGA)-related genes such as knotted-1 like homeobox (Knox) genes were also repressed in SGA plants. The microarray analysis strongly suggests that an autoimmune response-like reaction might be triggered by intergenomic incompatibility between the AB and U genomes in SGA. In addition, SAM-related and cell cycle-related genes were dramatically down-regulated in crown tissues of SGA, indicating that abnormalities of SAM are associated with the abnormal growth phenotypes in SGA.

2017-01-24 | GSE93943 | GEO

Aegilops umbellulata cultivar:TA1851

Project description:Aegilops umbellulata cultivar:TA1851 Genome sequencing

| PRJNA1020739 | ENA

Aegilops umbellulata strain:KU-4017

Project description:Gene expression analysis of the powdery mildew infected awns of the wild wheat relative Aegilops umbellulata

| PRJDB8926 | ENA

Aegilops umbellulata

Project description:Genomes of Aegilops umbellulata provide new insights into unique structural variations and genetic diversity in the U-genome for wheat improvement

| PRJNA1071595 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data