Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Drosophila melanogaster strain:S2 cells

ABSTRACT: Total RNA-seq analysis of Ago1 or Iru-depleted Drosophila S2 cells

PROVIDER: PRJDB6973 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR128851.fastq.gz	Fastqsanger.gz
	DRR128852.fastq.gz	Fastqsanger.gz
	DRR128853.fastq.gz	Fastqsanger.gz
	DRR128854.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

Drosophila melanogaster strain:S2 cells

Project description:Small RNA-seq analysis of Ago1 or Iru-depleted Drosophila S2 cells

| PRJDB6974 | ENA

Ecd protein interactome in Drosophila melanogaster S2 cells

Project description:Identification of the interaction partners of the protein ecdysoneless (Ecd) in Drosophila melanogaster S2 cells as well as profiling of the changes in binding for mutant, truncated Ecd del34 protein.

2021-09-09 | PXD019838 | Pride

Drosophila melanogaster S2-GMR cells, second biological replicate

2009-01-22 | GSE14488 | GEO

RNAi knock down of mRNA decapping co-activators in Drosophila S2 cells

Project description:We analyzed mRNA expression profiles in Drosophila melanogaster S2 cells that had been depleted of proteins known as mRNA decapping co-activators. mRNA decapping is catalyzed by DCP2, and DCP2 activity is stimulated by decapping co-activators. This group of proteins includes DCP1, Hedls (also known as Ge-1), LSm16 (also known as EDC3), rck/p54 (also known as DHH1 or Me31B), Pat1, and the heptameric LSm1-7 complex. We used the RNA interference technology to deplete cultured S2 cells of DCP1 (CG11183), Ge-1 (CG6181), Pat1 (CG5208), LSm16 (CG6311), and LSm1 (CG4279). We used Affymetrix oligonucleotide microarrays to analyze two independent samples for each depletion. We included the following controls: mock RNAi treatment and GFP dsRNA treatment (two profiles each). We also profiled AGO1 (CG6671) depleted cells (3 independent samples). AGO1 is a key protein required for miRNA-mediated gene silencing. We had shown previously that silencing by miRNAs involves decapping of target mRNAs.

2007-09-03 | E-MEXP-1012 | biostudies-arrayexpress

Drosophila melanogaster strain:S2 cells

Project description:Drosophila melanogaster strain:S2 cells Targeted Locus (Loci)

| PRJNA271521 | ENA

Drosophila melanogaster strain:S2 cells

Project description:Drosophila melanogaster strain:S2 cells Transcriptome or Gene expression

| PRJNA251585 | ENA

Genome wide distribution of dH1K27me2 in Wild Type Drosophila melanogaster S2 cells

Project description:Genome wide distribution of dH1K27me2 in Wild Type Drosophila melanogaster S2 cells

2022-08-02 | GSE167018 | GEO

RNA-Seq in Drosophila melanogaster S2 cells

Project description:RNA-Seq procedure was used for analysis of expression in S2 cells.

2020-12-31 | GSE145320 | GEO

Drosophila melanogaster S2-GMR cells, second biological replicate

Project description:High-throughput sequencing of Drosophila melanogaster small RNAs from S2 cells. total RNA, ~18-26nt RNAs isolated using PAGE, ligation to adapters requires 5' monophosphate and 3' OH For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf Small RNAs were sequenced from D. melanogaster S2 cells obtained from Gerald Rubin's lab. Raw sequences were clipped by 3' linker sequences recognition, and select clipped sequences longer than 18 nt.

2009-01-22 | E-GEOD-14488 | biostudies-arrayexpress