Imperata cylindrica
Ontology highlight
ABSTRACT:
REPOSITORIES: ENA
Dataset's files
| Action | DRS | |||
|---|---|---|---|---|
| DRR174871_1.fastq.gz | Fastqsanger.gz | |||
| DRR174871_2.fastq.gz | Fastqsanger.gz | |||
| DRR174872_1.fastq.gz | Fastqsanger.gz | |||
| DRR174872_2.fastq.gz | Fastqsanger.gz | |||
| DRR174873_1.fastq.gz | Fastqsanger.gz |
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Similar Datasets
Project description:F1 hybrids dominated zone without backcross and F2 were made by flowering phenology shift of F1 hybrids between intraspecific ecotypes in Imperata cylindrica
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Project description:Herbaspirillum strain:Imperata cylindrica | isolate:Imperata cylindrica Raw sequence reads
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Project description:Imperata cylindrica var. major Transcriptome or Gene expression
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Project description:The omicron variant and its sublineages are highly contagious, and they still constitute a global source of concern despite vaccinations. Hospitalizations and mortality rates resulting from infections by these variants of concern are still common. The existing therapeutic alternatives have presented various setbacks such as low potency, poor pharmacokinetic profiles, and drug resistance. The need for alternative therapeutic options cannot be overemphasized. Plants and their phytochemicals present interesting characteristics that make them suitable candidates for the development of antiviral therapeutic agents. This study aimed to investigate the antiviral potential of Imperata cylindrica (I. cylindrica). Specifically, the objective of this study was to identify I. cylindrica phytochemicals that display inhibitory effects against SARS-CoV-2 main protease (Mpro), a highly conserved protein among coronaviruses. Molecular docking and in silico pharmacokinetic assays were used to assess 72 phytocompounds that are found in I. cylindrica as ligands and Mpro (6LU7) as the target. Only eight phytochemicals (bifendate, cylindrene, tabanone, siderin, 5-hydroxy-2-[2-(2-hydroxyphenyl)ethyl]-4H-1-benzopyran-4-one, maritimin, 5-methoxyflavone, and flavone) displayed high binding affinities with Mpro with docking scores ranging from -5.6 kcal/mol to -9.1 kcal/mol. The in silico pharmacokinetic and toxicological assays revealed that tabanone was the best and safest phytochemical for the development of an inhibitory agent against coronavirus main protease. Thus, the study served as a baseline for further in vitro and in vivo assessment of this phytochemical against Mpro of SARS-CoV-2 variants of concern to validate these in silico findings.
| S-EPMC11317227 | biostudies-literature
Project description:This study analyzed Imperata cylindrica litter to determine variation in bacterial community composition and function along with enzyme activity as phytoremediation progresses. We found significant differences in physical and chemical properties of soil and litter in the different sub-dams investigated. The Actinobacteria, Gammaproteobacteria and Alphaproteobacteria were the dominant bacteria found in the litter of the different sub-dams. The alpha diversity (?-diversity) of litter bacterial community increased over as phytoremediation progressed, while total soil carbon and total litter carbon content were positively correlated to bacterial ?-diversity. Total litter carbon and total nitrogen were the key factors that influenced bacterial community structure. Heavy metal can influence the degradation of litters by altering the composition of the microbial community. Furthermore, bacterial communities encoded with alpha-amylase (?-amylase) dominated during the initial phytoremediation stage; however, bacterial communities encoded with hemicellulase and peroxidase gradually dominated as phytoremediation progressed. Findings from this study provide a basis for exploring litter decomposition mechanisms in degraded ecosystems, which is critically important to understand the circulation of substances in copper tailings dams.
| S-EPMC7391973 | biostudies-literature
Project description:The metallophyte Imperata cylindrica inhabits copper (Cu) polluted soils in large areas from Central Chile. Here, we subjected clonal vegetative plantlets to 300 mg Cu kg-1 of substrate for 21 days to identify the main molecular pathways involved in the response to Cu stress. Transcriptomic analyses were performed for shoots and roots, with and without Cu supply. RNA-Seq and de novo transcriptome assembly were performed to identify the gene response associated with molecular mechanisms of Cu tolerance in I. cylindrica. De novo transcriptome revealed a total of 200,521 transcripts (1777 bp) comprising ~91% complete ultra-conserved genes in the eukaryote and Plantae database. The differentially expressed genes (DEGs) in roots were 7386, with 3558 of them being up-regulated and the other 3828 down-regulated. The transcriptome response in shoots was significantly less, showing only 13 up-regulated and 23 down-regulated genes. Interestingly, DEGs mainly related with actin and cytoskeleton formation, and to a minor degree, some DEGs associated with metal transporters and superoxide dismutase activity in root tissues were found. These transcriptomic results suggest that cytoskeleton could be acting as a mechanism of Cu-binding in the root, resulting in a high Cu tolerance response in this metallophyte, which deserve to be analyzed ultra-structurally. Our study contributes to reinforcing the potential of I. cylindrica as a candidate plant species to be used as a phytoremediation agent in Cu-contaminated environments.
| S-EPMC7918359 | biostudies-literature
Project description:The local botanical Imperata cylindrica in Cameroon was investigated for its antibacterial potency. The methanol extract afforded a total of seven compounds, including five hitherto unreported compounds comprising three flavonoids (1-3) and two C-15 isoprenoid analogues (4 and 5) together with known derivatives (6 and 7). The novelty of the flavonoids was related to the presence of both methyl and prenyl groups. The potential origin of the methyl in the flavonoids is discussed, as well as the chemophenetic significance of our findings. Isolation was performed over repeated silica gel and Sephadex LH-20 column chromatography and the structures were elucidated by (NMR and MS). The crude methanol extract and isolated compounds showed considerable antibacterial potency against a panel of multi-drug resistant (MDR) bacterial strains. The best MIC values were obtained with compound (2) against S. aureus ATCC 25923 (32 µg/mL) and MRSA1 (16 µg/mL).
| S-EPMC8401516 | biostudies-literature
Project description:Microorganisms drive litter decomposition while maintaining the chemical cycle of ecosystems. We used the dominant vegetation (Imperata cylindrica) in the mining area selected for this study for this experiment to explore fungal community characteristics, key fungal groups, and their associative driving factors during I. cylindrica litter decomposition. Maximum litter C/N values occurred 100days after the commencement of the decomposition experiment during all different recovery years in this copper tailings area. Heavy metals in litter [copper (Cu), zinc (Zn), plumbum (Pb), and cadmium (Cd)] accumulated gradually with decomposition. The dominant fungal phyla observed in the community were Ascomycota and Basidiomycota, while the classes Sordariomycetes and Eurotiomycetes significantly increased as litter decomposition progressed. Degrees of connectivity and interaction between fungal communities were highest during the early litter decomposition stage. Sordariomycetes, Dothideomycetes, and Leotiomycetes all played critical roles in maintaining fungal community relationships. The effect of physicochemical properties and enzyme activities in I. cylindrica litter was significant on the dominant fungi, while driving factors that affected fungal communities differed over different recovery stages. Total nitrogen (TN), heavy metals, pH, and enzyme activities in the little were significantly correlated with fungal community composition. Litter properties throughout the litter decomposition process mainly affected the dynamics of the fungal community structure. The main environmental factors that affected fungal community structure were copper content and pH. Dichotomopilus, Trichoderma, Knufia, Phialophora, Oxyporus, and Monocillium, which all played important roles in litter decomposition, positively correlated with heavy metals, sucrase, and catalase. Finally, results from this study will help us better clarify litter decomposition mechanisms in degraded ecosystems as well as provide a scientific basis for improving species cycling and nutrient transformation efficiency in mining ecosystems.
| S-EPMC8647173 | biostudies-literature