Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Polypedilum vanderplanki

ABSTRACT: Transcriptomic analysis of anhydrobiotic gene regulatory network for cultured cell line, Pv11, from Polypedilum vanderplanki

PROVIDER: PRJDB8758 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR191026.fastq.gz	Fastqsanger.gz
	DRR191027.fastq.gz	Fastqsanger.gz
	DRR191028.fastq.gz	Fastqsanger.gz
	DRR191029.fastq.gz	Fastqsanger.gz
	DRR191030.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 30

Similar Datasets

Transcriptomic analysis of Pv11 cells derived from Polypedilum vanderplanki

Project description:RNA-Seq of Pv11 cells derived from the anhydrobiotic organism Polypedilum vanderplank, exposed to various stresses.

2022-03-07 | GSE158443 | GEO

Polypedilum vanderplanki

Project description:Transcriptomic analysis of anhydrobiosis for cultured cell line, Pv11, from Polypedilum vanderplanki

| PRJDB7516 | ENA

Polypedilum vanderplanki

Project description:Polypedilum vanderplanki overview

| PRJNA298262 | ENA

Polypedilum vanderplanki

Project description:Polypedilum vanderplanki transcriptome during desiccation-rehydration cycle

| PRJNA312200 | ENA

Polypedilum vanderplanki isolate:Genomic line

Project description:Chromosome level genome of Polypedilum vanderplanki.

| PRJNA660906 | ENA

Genome-wide role of HSF1 in transcriptional regulation for desiccation tolerance of an anhydrobiotic cell line, Pv11

Project description:Pv11 is an insect cell line established from Polypedilum vanderplanki with ability to survive complete desiccation if they were treated with trehalose. Previous studies showed contribution of HSF1 gene in this adaptation. To determine HSF1 regulatory network in Pv11 cells we prepared RNAseq libraries for wild type Pv11 (WT), HSF1 knoked out (Hsf1-/-), HSf1 resqued (Hsf1-/-; Hsf1-HaloTag/BlaR), and negative control for HSF1 resqued cells (Hsf1-/- HaloTag/BlaR) under normal conditions and under incubation with trehalose for 48 h. Comparison of mRNA profiles showed that HSF1 induced anhydrobiosis-related genes, especially LEA and TRX, but suppressed cellular process-related genes, for example transcription- and translation-related genes.

2021-05-28 | GSE171333 | GEO

Polypedilum vanderplanki

Project description:Pv11 Transcriptome

| PRJNA342095 | ENA

Polypedilum vanderplanki strain:NIAS inbreed line

Project description:Genome analysis of desiccation tolerant midge, Polypedilum vanderplanki

| PRJDB1558 | ENA

Identification of Genomic Safe Harbors in the Anhydrobiotic Cell Line, Pv11

Project description:Genomic safe harbors (GSHs) are utilized as an ideal integration site for generating transgenic organisms and cells. Discovery of GSHs is one of the crucial factors for the advancement of basic and applied biology in the species. Such GSHs were discovered in Pv11 (Polypedilum vanderplanki) cell line, which can survive extreme desiccation. To identify the integration sites, high-molecular-weight genomic DNAs were extracted. The DNA libraries were prepared and sequenced with a Nanopore MinION sequencer. In the way to confirm that GSHs loci are localized in open chromatin regions we prepared ATAC-seq libraries, which were sequenced in Illumina HiSeq2500.

2022-03-01 | GSE190481 | GEO

Polypedilum vanderplanki

Project description:Regulation of gene expression under extreme desiccation: hijacking of heat shock regulatory system.

| PRJNA313948 | ENA