Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Rhizosphere metagenome

ABSTRACT: Community analysis of duckweed-associated bacteria upon inoculation of PGPB

PROVIDER: PRJDB8938 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR197104_1.fastq.gz	Fastqsanger.gz
	DRR197104_2.fastq.gz	Fastqsanger.gz
	DRR197105_1.fastq.gz	Fastqsanger.gz
	DRR197105_2.fastq.gz	Fastqsanger.gz
	DRR197106_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 30

Similar Datasets

Project description:Tall fescue endophytic community upon inoculation with PGPB

| PRJNA944180 | ENA

rhizosphere metagenome

Project description:Impact of biochar and PGPB inoculation on rhizosphere and root-associated bacterial communities in rice

| PRJDB8720 | ENA

Expression data from tomato root tissue inoculated or not with a plant growth promoting bacteria (PGPB) strain

Project description:Possitive effects of plant growth promoting bacteria (PGPB) inoculation on plant growth and development are dependent on interaction between bacterial strains and plant roots, which are usually the bacterial niche. Furthermore, phytohormones are key regulators of plant physiology. Ethylene is essential in plant growth and development and in response to drought. Plant sensibility to ethylene is involved in plant response to PGPB strain inoculation and plant growth promotion. We used microarrays to detail the global programme of gene expression underlying plant interaction with two different PGPB strains (isolated from arid soils in southern Spain) regarding to plant sentitivity to ethylene by tomato ethylene receptor 3 (SlETR3).

2018-01-29 | GSE106317 | GEO

rhizosphere metagenome

Project description:Duckweed rhizosphere

| PRJDB8298 | ENA

RNA-seq of coding RNA from 4-day old wheat root samples with or without colonisation by bacterium Azospirillum brasilense

Project description:Plant growth promoting bacteria (PGPB) might be an alternative to increase nitrogenous use efficiency (NUE) in important crops such wheat. Azospirillum brasilense is one of the most promising PGPB and wheat roots colonized by Azospirillum brasilense is a good model to investigate the molecular basis of plant-PGPB interaction including improvement in plant-NUE promoted by PGPB. An RNA-seq transcriptional analysis of Triticum aestivum roots was carried out in two independent samples (biological replicates) of each treatment (PGPB-colonized or non-inoculated), yielding a total of 4 sequencing libraries, which were designated CWR1 and CWR2 libraries (colonized roots) and N-IWR1 and N-IWR2 (non-inoculated roots).

2014-04-10 | E-MTAB-2301 | biostudies-arrayexpress

Vitis vinifera rhizosphere characterization: a metaproteome approach

Project description:Rhizosphere is a complex system of interactions between plant roots, bacteria, fungi and animals, where the release of plant root exudates stimulates bacterial density and diversity. However, the majority of the bacteria in soil results to be unculturable but active. The aim of the present work was to characterize the microbial community associated to the root of V. vinifera cv. Pinot Noir not only under a taxonomic perspective, but also under a functional point of view, using a metaproteome approach. Our results underlined the difference between the metagenomic and metaproteomic approach and the large potentiality of proteomics in describing the environmental bacterial community and its activity. In fact, by this approach, that allows to investigate the mechanisms occurring in the rhizosphere, we showed that bacteria belonging to Streptomyces, Bacillus and Pseudomonas genera are the most active in protein expression. In the rhizosphere, the identified genera were involved mainly in phosphorus and nitrogen soil metabolism.

2022-02-28 | PXD007670 | Pride

rhizosphere metagenome

Project description:Modification of duckweed microbiome by Bacteriovorax sp. HI3

| PRJDB15558 | ENA

Project description:The microbiome change of PGPB inoculation

| PRJNA703719 | ENA

plant metagenome

Project description:Synthetic bacterial community of duckweed

| PRJDB10361 | ENA

rhizosphere metagenome

Project description:Buffalo grass rhizosphere bacteria community Raw sequence reads

| PRJNA350838 | ENA