Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Rhodococcus sp. HA99 strain:JCM 9789

ABSTRACT: Genome sequencing of Rhodococcus sp. JCM 9789

PROVIDER: PRJDB903 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	DRR017794.fastq.gz	Fastqsanger.gz
	DRR017795.fastq.gz	Fastqsanger.gz

Items per page:

1 - 3 of 3

Similar Datasets

Multi-omics investigation of Rhodococcus sp. strain DN22

Project description:Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) is a persistent nitramine explosive with long-lasting properties. Rhodococcus sp. strain DN22 has been discovered as one of the microorganisms capable of RDX degradation. Despite respectable studies on Rhodococcus sp. strain DN22, the proteins participating in RDX degradation (Oxidoreductase and Cytochrome P450) in the strain remain to be fragments. In this study, complete genome of Rhodococcus sp. strain DN22 was sequenced and analyzed, and the entire sequences of the two genes encoding Oxidoreductase and Cytochrome P450 in Rhodococcus sp. strain DN22 were predicted, which were validated through proteomic data. Besides, despite the identification of certain chemical substances as proposed characterized degradation intermediates of RDX, few studies have investigated the physiological changes and metabolic pathways occurring within Rhodococcus sp. cells when treated with RDX, particularly through the use of mass spectrometry-based omics. Hence, proteomics and metabolomics of Rhodococcus sp. strain DN22 were performed and analyzed with the presence or absence of RDX in the medium. A total of 3186 protein groups were identified and quantified between the two groups, with 117 proteins being significantly differentially expressed proteins. A total of 1056 metabolites were identified after merging positive and negative ion modes, among which 131 metabolites were significantly differential. Through the combined analysis of differential proteomics and metabolomics, several KEGG pathways, including two-component system, ABC transporters, alanine, aspartate and glutamate metabolism, arginine biosynthesis, purine metabolism, nitrogen metabolism, and phosphotransferase system (PTS) were found to be significantly enriched. We expect that our investigation will expand the acquaintance of Rhodococcus sp. strain DN22, and the knowledge of microbial degradation.

2024-05-22 | PXD044565 | Pride

Effect of biphenyl, ethylbenzene, and benzoate on Rhodococcus sp. RHA1

Project description:This SuperSeries is composed of the following subset Series: GSE5268: Effects of biphenyl on Rhodococcus sp. RHA1 GSE5269: Effects of ethylbenzene on Rhodococcus sp. RHA1 GSE5270: Effects of benzoate on Rhodococcus sp. RHA1 Refer to individual Series

2010-07-01 | E-GEOD-5280 | biostudies-arrayexpress

Rhodococcus sp. RHA1 grown on propane versus pyruvate

Project description:three late exponential phase Rhodococcus sp. RHA1 propane-grown cultures compared to pyruvate-grown cultures Keywords: growth substrate

2007-11-01 | GSE8480 | GEO

Rhodococcus sp. JCM 9791

Project description:Genome sequencing of Rhodococcus sp. JCM 9791

| PRJDB887 | ENA

Rhodococcus sp. JCM 9793

Project description:Genome sequencing of Rhodococcus sp. JCM 9793

| PRJDB888 | ENA

Rhodococcus sp. JCM 3009

Project description:Genome sequencing of Rhodococcus sp. JCM 3009

| PRJDB941 | ENA

Rhodococcus sp. RHA1 grown on propane versus pyruvate

Project description:three late exponential phase Rhodococcus sp. RHA1 propane-grown cultures compared to pyruvate-grown cultures three two-colour microarrays

2010-06-25 | E-GEOD-8480 | biostudies-arrayexpress

Rhodococcus tukisamuensis strain:JCM 11308 | isolate:JCM 11308

Project description:Rhodococcus tukisamuensis JCM 11308 genome sequencing

| PRJNA335125 | ENA

Rhodococcus erythropolis strain:JCM 6824

Project description:Rhodococcus erythropolis JCM 6824 Genome Project

| PRJDB3086 | ENA

Rhodococcus erythropolis JCM 9803

Project description:Genome sequencing of Rhodococcus erythropolis JCM 9803

| PRJDB891 | ENA