Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Synechocystis sp. PCC 6803 substr. GT-I

ABSTRACT: Whole genome sequencing, high light tolerant strains of Synechocystis sp. PCC 6803

PROVIDER: PRJDB9843 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR228289_1.fastq.gz	Fastqsanger.gz
	DRR228289_2.fastq.gz	Fastqsanger.gz
	DRR228290_1.fastq.gz	Fastqsanger.gz
	DRR228290_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

Synechocystis sp. PCC 6803 substr. GT-I

Project description:Whole genome sequencing, alcohol tolerant strains of Synechocystis sp. PCC 6803

| PRJDB6404 | ENA

Synechocystis sp. PCC 6803 substr. GT-T

Project description:Synechocystis sp. PCC 6803 substr. GT-T Genome sequencing

| PRJNA821690 | ENA

Synechocystis sp. PCC 6803 substr. GT-I

Project description:Synechocystis sp. PCC 6803 GT-I genome sequencing project

| PRJDA72559 | ENA

Synechocystis sp. PCC 6803 substr. GT-W

Project description:WGBS and m6A-RE-seq in Synechocystis sp. PCC 6803

| PRJNA453893 | ENA

Transcriptome analysis of the microalgae Synechocystis sp. PCC 6803 and mechanisms of photoinhibition tolerance under extreme high light conditions

Project description:To investigate acclimation mechanisms employed under extreme high light conditions, gene expression analysis was performed using the model microalgae Synechocystis sp. PCC 6803 (PCC 6803) cultured under various light intensities. From the low to the mid light conditions, the expression of genes related to light harvesting systems was repressed, whereas that of CO2 fixation and of D1 protein turnover-related genes was induced. Gene expression data also revealed that the down-regulation of genes related to flagellum synthesis (pilA2), pyridine nucleotide transhydrogenase (pntA and pntB), and sigma factor (sigA and sigF) represents acclimation mechanisms of PCC 6803 under excessive high light conditions.

2018-03-06 | GSE111408 | GEO

Synechocystis sp. PCC 6803 substr. PCC-P

Project description:Synechocystis sp. PCC 6803 PCC-P genome sequencing project

| PRJDA72557 | ENA

Synechocystis sp. PCC 6803 substr. PCC-N

Project description:Synechocystis sp. PCC 6803 PCC-N genome sequencing project

| PRJDA72561 | ENA

Synechocystis sp. PCC 6803 trophic condition

Project description:Targeted proteome analysis of Synechocystis sp. PCC 6803 under photoautotrophic and mixotrophic conditions

2020-06-02 | PXD010010 | JPOST Repository

RNAseq Analysis of Artificial Genome Relaxation in Synechocystis sp. PCC 6803

Project description:In cyanobacteria DNA supercoiling varies over the diurnal light/dark cycle and is integrated with temporal programs of transcription and replication. We manipulated DNA supercoiling in Synechocystis sp. PCC 6803 by CRISPRi-based knockdown of gyrase subunits gyrA, gyrB and overexpression of topoisomerase I (TopoI) topA and analyzed the transcriptional response to gyrase knock-downs (endpoint in triplicate) and topoisomerase I overexpression (endpoint in triplicate, and 19 time points time series before and after induction) in Synechocystis sp. PCC 6803 via RNA-seq of coding RNA. In detail, Illumina Ribo-Zero Plus rRNA Depletion Kit was used to remove the ribosomal RNA molecules from the isolated total RNA. Removal of rRNA was evaluated with the RNA Pico 6000 kit on the Agilent 2100 Bioanalyzer. RNA was free of detectable rRNA. Preparation of cDNA libraries was performed according to the manufacturer’s instructions for the TruSeq stranded mRNA kit (Illumina, San Diego, CA, United States). Subsequently, each cDNA library was sequenced on an Illumina NextSeq 500 system (2 x 75 nt PE high output v2.5).

2021-12-06 | E-MTAB-10949 | biostudies-arrayexpress

Adaptive evolution provides a high-light stress tolerance in Synechocystis sp. PCC 6803

Project description:we obtained a HL tolerant (Tol) strain Synechocystis sp. PCC 6803 by adaptive evolution experiment that the cells were repeatedly subcultured for prolonged periods of time (52 days) under high light stress condition (7000 to 9000 μmol m-2 s-1). Although the growth of the parental strain almost stopped under 9000 μmol m-2 s-1, no growth inhibition was observed in the Tol strain. Furthermore, the growth rate was identical to that of parental strain under low light condition (40 μmol m-2 s-1). To further investigate the high light tolerant mechanisms in the Tol strain, the transcriptome was performed. The transcriptome data suggests the increase of isiA expression in the Tol strain under HL condition. The overexpression of isiA successfully enhanced the HL stress tolerance in the parental strain. The HL tolerant mechanism was different from previous reported mechanisms, such as a reduction of the light-harvesting antenna size. The tolerant strain would be an attractive host for bio-production under high light conditions.

2020-05-06 | GSE149892 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data