Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Oryzias curvinotus

ABSTRACT: WGS of Adrianichthyidae in South and Southeast Asia

PROVIDER: PRJDB9918 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR228807_1.fastq.gz	Fastqsanger.gz
	DRR228807_2.fastq.gz	Fastqsanger.gz
	DRR228808_1.fastq.gz	Fastqsanger.gz
	DRR228808_2.fastq.gz	Fastqsanger.gz
	DRR228809_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 20

Similar Datasets

Transcriptome analysis of rice infected with RGSV

2011-11-01 | GSE25217 | GEO

Genome-wide Investigation of Population Structure in Myanmar

Project description:Myanmar locates in the crossroads of South Asia, Southeast Asia, and East Asia, and is known for high culture diversity in different ethnic groups. It is considered to be important for understanding human evolutionary history and genetic diversity in East Eurasia. However, relatively few studies have examined the population structure and demographic history in Myanmar to date. In this study, we analyzed more than 220,000 genome-wide SNPs in 175 new samples of five ethnic groups from Myanmar and compared them with the published data. Our results showed that the Myanmar population is intricately substructured, with the main observed clusters corresponding roughly to western/northern highlanders (Chin, Naga, and Jingpo) and central/southern lowlanders (Bamar and Rakhine). The gene flow inferred from South Asia has a substantial influence (~11%) on the gene pool of central/southern lowlanders rather than western/northern highlanders. The genetic admixture is dated around 650 years ago. These findings suggest that the genome-wide variation in Myanmar was likely shaped by the linguistic, cultural, and historical changes.

2019-12-31 | GSE74100 | GEO

The Ami and Yami aborigines of Taiwan and their genetic relationship to East Asian and Pacific populations

Project description:We combined new data with previously published data (PMID: 25877615, 26811443, 29379068, 18292342, 24297229, 27302840, 24395773 and 30846778) to compare phylogenetic relationships of the Ami and Yami aborigenes of Taiwan to groups from mainland Southeast Asia, island Southeast Asia and Oceania.

2021-08-23 | GSE152194 | GEO

Transcriptome analysis of rice infected with RGSV

Project description:Rice grassy stunt disease is mainly observed in South, Southeast and East Asia, and caused by Rice grassy stunt virus (RGSV). Specific symptom appeared on RGSV infected rice plant is excess tillering. To guess how to induce excess tillering in RGSV infected plant, we analyzed the global gene expression changes in RGSV infected plants. Keywords: virus infection, disease response Comparison between RGSV and mock infected rice. Biological replicates: 3 control, 3 infected, independently grown and harvested. 1samples derived from 5 plants grown under same conditons

2011-11-01 | E-GEOD-25217 | biostudies-arrayexpress

Multi-layered population structure in Island Southeast Asians

Project description:The history of human settlement in Southeast Asia has been complex and involved several distinct dispersal events. Here we report the analyses of 1825 individuals from Southeast Asia including new genome-wide genotype data for 146 individuals from three Mainland Southeast Asian (Burmese, Malay and Vietnamese) and four Island Southeast Asian (Dusun, Filipino, Kankanaey and Murut) populations. While confirming the presence of previously recognized major ancestry components in the Southeast Asian population structure, we highlight the Kankanaey Igorots from the highlands of the Philippine Mountain Province as likely the closest living representatives of the source population that may have given rise to the Austronesian expansion. This conclusion rests on independent evidence from various analyses of autosomal data and uniparental markers.

2016-02-04 | GSE77508 | GEO

Venomics of the horned desert Viper (Cerastes Cerastes) and the mangrove pit viper (Cryptelytrops purpureomaculatus)

Project description:In this study two Viperidae species, living in two different habitats, the horned desert viper (Cerastes cerastes) native to the deserts in North Africa and in turn the mangrove pit viper (Cryptelytrops purpureomaculatus), which can be found in South/Southeast Asia, were studied in terms of the identification of the venom proteome.

2018-08-07 | MSV000082753 | MassIVE

Oryzias curvinotus

Project description:Oryzias curvinotus Genome sequencing and assembly

| PRJNA1033147 | ENA

Oryzias curvinotus

Project description:Oryzias curvinotus Transcriptome or Gene expression

| PRJNA768990 | ENA

Oryzias curvinotus

Project description:Oryzias curvinotus Raw sequence reads

| PRJNA1043248 | ENA

Oryzias curvinotus

Project description:Oryzias curvinotus Raw sequence reads