Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

South China Sea (SCS) sediments MiSeq 16S rRNA gene sequencing (archaeal 16S rRNA gene)

ABSTRACT: MiSeq 16S rRNA gene (archaeal 16S rRNA gene) sequences of 12 SCS sediments

PROVIDER: PRJEB11900 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR1146990.fastq.gz	Fastqsanger.gz
	ERR1146991.fastq.gz	Fastqsanger.gz
	ERR1146992.fastq.gz	Fastqsanger.gz
	ERR1146993.fastq.gz	Fastqsanger.gz
	ERR1146994.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

South China Sea (SCS) sediments MiSeq 16S rRNA gene sequencing (archaeal 16S rRNA gene)

Project description:MiSeq 16S rRNA gene (archaeal 16S rRNA gene) sequences of 4 SCS sediments

| PRJEB13564 | ENA

South China Sea (SCS) sediments MiSeq 16S rRNA gene sequencing (Thaumarchaeota 16S rRNA gene)

Project description:MiSeq 16S rRNA gene (Thaumarchaeota 16S rRNA gene) sequences of 12 SCS sediments

| PRJEB11906 | ENA

South China Sea (SCS) sediments MiSeq 16S rRNA gene sequencing (prokaryotic 16S rRNA gene)

Project description:MiSeq 16S rRNA gene (prokaryotic 16S rRNA gene) sequences of 16 SCS sediments

| PRJEB13563 | ENA

petroleum reservior MiSeq 16S rRNA gene sequencing（archaeal 16S rRNA gene)

Project description:MiSeq 16S rRNA gene（archaeal 16S rRNA gene) sequences of aqueous and oil phases from eight petroleum reservior samples across China

| PRJEB10996 | ENA

Mai Po wetland sediments MiSeq 16S rRNA gene sequencing (archaeal 16S rRNA gene)

Project description:MiSeq 16S rRNA gene (archaeal 16S rRNA gene) sequences of 33 Mai Po sediments, including 18 samples from winter and 15 samples from summer

| PRJEB12429 | ENA

16s rRNA-young and old mouse gut microbiota-stroke

Project description:To explore the effects of gut microbiota of young (8 weeks) or old mice (18～20 months) on stroke, feces of young (Y1-Y9) and old mice (O6-O16) were collected and analyzed by 16s rRNA sequencing. Then stroke model was established on young mouse receive feces from old mouse (DOT1-15) and young mouse receive feces from young mouse (DYT1-15). 16s rRNA sequencing were also performed for those young mice received feces from young and old mice.

2021-10-15 | E-MTAB-10837 | biostudies-arrayexpress

Quantification of mock microbial communities with metagenomes, 16S rRNA gene amplicons and metaproteomics

Project description:In this study we developed metaproteomics based methods for quantifying taxonomic composition of microbiomes (microbial communities). We also compared metaproteomics based quantification to other quantification methods, namely metagenomics and 16S rRNA gene amplicon sequencing. The metagenomic and 16S rRNA data can be found in the European Nucleotide Archive (Study number: PRJEB19901). For the method development and comparison of the methods we analyzed three types of mock communities with all three methods. The communities contain between 28 to 32 species and strains of bacteria, archaea, eukaryotes and bacteriophage. For each community type 4 biological replicate communities were generated. All four replicates were analyzed by 16S rRNA sequencing and metaproteomics. Three replicates of each community type were analyzed with metagenomics. The "C" type communities have same cell/phage particle number for all community members (C1 to C4). The "P" type communities have the same protein content for all community members (P1 to P4). The "U" (UNEVEN) type communities cover a large range of protein amounts and cell numbers (U1 to U4). We also generated proteomic data for four pure cultures to test the specificity of the protein inference method. This data is also included in this submission.

2017-05-12 | PXD006118 | Pride

petroleum reservior MiSeq 16S rRNA gene sequencing（prokaryotic 16S rRNA gene)

Project description:MiSeq 16S rRNA gene（prokaryotic 16S rRNA gene) sequences of aqueous and oil phases from eight petroleum reservior samples across China

| PRJEB9855 | ENA

A phylogenetic microarray targeting 16S rRNA genes from the bacterial division Acidobacteria

Project description:Investigation of the phylogenetic diversity of Acidobacteria taxa using PCR amplicons from positive control 16S rRNA templates and total genomic DNA extracted from soil and a soil clay fraction A ten chip study using PCR amplicons from cloned 16S rRNA genes and from diverse soil 16S rRNAs, with PCR primers specific to the Division Acidobacteria. Each chip measures the signal from 42,194 probes (in triplicate) targeting Acidobacteria division, subdivision, and subclades as well as other bacterial phyla. All samples except one (GSM464591) include 2.5 M betaine in the hybridization buffer. Pair files lost due to a computer crash.

2010-06-24 | E-GEOD-18711 | biostudies-arrayexpress

Mai Po sediments MiSeq 16S rRNA gene sequencing (prokaryotic 16S rRNA gene)

Project description:MiSeq 16S rRNA gene (prokaryotic 16S rRNA gene) sequences of 33 Mai Po sediments, including 18 samples from winter and 15 samples from summer

| PRJEB12432 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data