Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Metagenomic analysis of Neandertal bone Vi33.16 sequences.

PROVIDER: PRJEB1198 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR208318.fastq.gz	Fastqsanger.gz
	ERR208319.fastq.gz	Fastqsanger.gz
	ERR208320.fastq.gz	Fastqsanger.gz
	ERR208321.fastq.gz	Fastqsanger.gz
	ERR208322.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 282

Similar Datasets

La Ferrassie Neandertal mtDNA

Project description:MtDNA sequences obtained from a bone fragment associated with the La Ferrassie 8 Neandertal

| PRJEB37614 | ENA

Stajnia

Project description:mtDNA sequences of a Neandertal from Stajnia

| PRJEB20975 | ENA

HOME-BIO (sHOtgun MEtagenomic analysis of BIOlogical entities): from reads to pathogens. A specific and exhaustive pipeline for handling metagenomic shotgun sequencing data.

Project description:Next-Generation-Sequencing (NGS) technologies have led to important improvement in the detection of new or unrecognized infective agents, related to infectious diseases. In this context, NGS high-throughput technology can be used to achieve a comprehensive and unbiased sequencing of the nucleic acids present in a clinical sample (i.e. tissues). Metagenomic shotgun sequencing has emerged as powerful high-throughput approaches to analyze and survey microbial composition in the field of infectious diseases. By directly sequencing millions of nucleic acid molecules in a sample and matching the sequences to those available in databases, pathogens of an infectious disease can be inferred. Despite the large amount of metagenomic shotgun data produced, there is a lack of a comprehensive and easy-use pipeline for data analysis that avoid annoying and complicated bioinformatics steps. Here we present HOME-BIO, a modular and exhaustive pipeline for analysis of biological entity estimation, specific designed for shotgun sequenced clinical samples. HOME-BIO analysis provides comprehensive taxonomy classification by querying different source database and carry out main steps in metagenomic investigation. HOME-BIO is a powerful tool in the hand of biologist without computational experience, which are focused on metagenomic analysis. Its easy-to-use intrinsic characteristic allows users to simply import raw sequenced reads file and obtain taxonomy profile of their samples.

2021-07-26 | E-MTAB-9189 | biostudies-arrayexpress

HOME-BIO (sHOtgun MEtagenomic analysis of BIOlogical entities): from reads to pathogens. A specific and exhaustive pipeline for handling metagenomic shotgun sequencing data.

2021-07-26 | E-MTAB-9191 | biostudies-arrayexpress

Intestinal Flora of ADPKD and Prostate Cancer

Project description:Primary outcome(s): Metagenomic analysis and Metabolome analysis of Intestinal flora before, 2weeks, 1months, 3months, 6months, 12months

| 2636430 | ecrin-mdr-crc

Project description:Metagenomic analysis of bone marrow sample

| PRJEB34399 | ENA

metagenomic sequences

Project description:metagenomic sequences Metagenome

| PRJNA796459 | ENA

Project description:simulated metagenomic sequences

| PRJNA1061831 | ENA

Neandertal Sidron Capture project

Project description:Neandertal Sidron Capture project

| PRJEB2651 | ENA

Homo sapiens