Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Metatranscriptomes

ABSTRACT: Metatranscriptomes

PROVIDER: PRJEB12284 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR1198920_1.fastq.gz	Fastqsanger.gz
	ERR1198920_2.fastq.gz	Fastqsanger.gz
	ERR1198921_1.fastq.gz	Fastqsanger.gz
	ERR1198921_2.fastq.gz	Fastqsanger.gz
	ERR1198922_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 16

Similar Datasets

Red Sea coral metatranscriptomes

Project description:Red Sea coral metatranscriptomes

| PRJNA638633 | ENA

Aspo HRL metatranscriptomes

Project description:Aspo HRL metatranscriptomes Raw sequence reads

| PRJNA541524 | ENA

Metatranscriptomes of phytoplankton blooms from an ocean acidification mesocosm experiment

Project description:Sequencing the metatranscriptome can provide information about the response of organisms to varying environmental conditions. We present a methodology for obtaining random whole-community mRNA from a complex microbial assemblage using Pyrosequencing. The metatranscriptome had, with minimum contamination by ribosomal RNA, significant coverage of abundant transcripts, and included significantly more potentially novel proteins than in the metagenome. Keywords: metatranscriptome, mesocosm, ocean acidification This experiment is part of a much larger experiment. We have produced 4 454 metatranscriptomic datasets and 6 454 metagenomic datasets. These were derived from 4 samples. The experiment is an ocean acidification mesocosm set up in a Norwegian Fjord in 2006. We suspended 6 bags containing 11,000 L of sea water in a Coastal Fjord and then we bubbled CO2 through three of these bags to simulate ocean acidification conditions in the year 2100. The other three bags were bubbled with air. We then induced a phytoplankton bloom in all six bags and took measurements and performed analyses of phytoplankton, bacterioplankton and physiochemical characteristics over a 22 day period. We took water samples from the peak of the phytoplankton bloom and following the decline of the phytoplankton bloom to analyses using 454 metagenomics and 454 metatranscriptomics. Day 1, High CO2 Bag and Day 1, Present Day Bag, refer to the metatranscriptomes from the peak of the bloom. Day 2, High CO2 Bag and Day 2, Present Day Bag, refer to the metatranscriptomes following the decline of the bloom. Obviously High CO2 refers to the ocean acidification mesocosm and Present Day refers to the control mesocosm. Raw data for both the metagenomic and metatranscriptomic components are available at NCBI's Short Read Archive at ftp://ftp.ncbi.nlm.nih.gov/sra/Studies/SRP000/SRP000101

2008-02-08 | E-GEOD-10119 | biostudies-arrayexpress

SCOPE FALKOR Eukaryotic Metatranscriptomes

Project description:SCOPE FALKOR Eukaryotic Metatranscriptomes Raw sequence reads

| PRJNA982163 | ENA

AR in metatranscriptomes

Project description:Mining microbial metatranscriptomes for expression of antibiotic resistance genes under natural conditions

| PRJEB7599 | ENA

Metatranscriptomes of peat moss microbial communities

Project description:Metatranscriptomes of peat moss microbial communities

| PRJNA972298 | ENA

Metatranscriptomes from lab-scale anaerobic digesters

Project description:Metatranscriptomes from lab-scale anaerobic digesters