Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Barley BAC Assemblies

ABSTRACT: In frame of the IBSC sequenced BACs from Barley, that constitute the MTP of barley.

PROVIDER: PRJEB13020 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	FJWB02.dat.gz	Other
	FJWB02.fasta.gz	Fasta.gz
	FJWB02.master.dat	Other
	FJWB01.dat.gz	Other

Items per page:

1 - 4 of 4

Similar Datasets

Scaffolding Barley MTP BACs

Project description:Scaffolding Barley MTP BACs

| PRJEB7249 | ENA

2H BACs TGAC

Project description:In frame of the IBSC The Genome Analysis Centre (TGAC) sequenced BACs, that constitute the MTP of barley chromosome 2H using Illumina 2000 chemistry.

| PRJEB11758 | ENA

2H MP TGAC

Project description:In frame of the IBSC The Genome Analysis Centre (TGAC) sequenced BACs, that constitute the MTP of barley chromosome 2H using MatePair Pool Sequencing.

| PRJEB11798 | ENA

IBSC Barley BAC pools HiSeq

Project description:IBSC Barley BAC pools HiSeq

| PRJEB8579 | ENA

0H BACs TGAC

Project description:In frame of the IBSC The Genome Analysis Centre (TGAC) sequenced BACs, that constitute the MTP of barley using Illumina 2000 chemistry. The BACs presented here could not be assigned to any barley chromosome yet and were therefore assigned as 0H.

| PRJEB11991 | ENA

Comparative genomic hybridization by array of barley BAC pools to anchor BACs physical and genetic maps

Project description:BAC pool DNA hybridisation of barley to 44k Agilent microarrays. We have used two-channel Agilent expression microarrays to address thousands of gene sequences to individual BAC clones and contigs that form part of an emerging physical map of the large and unsequenced 5300 Mbp barley genome. By using two-colour processing, each array allows simultaneous co-hybridization of two independent BAC pools (SP), for which the data is analysed separately. As a general approach the method represents a cost-effective, highly parallel alternative to traditional gene-to-BAC addressing methods. By coupling the BAC address-data with gene-based genetic maps we were able to anchor thousands of BACs to the barley genetic map.

2010-12-02 | E-TABM-1017 | biostudies-arrayexpress

0H BACs MP TGAC

Project description:In frame of the IBSC The Genome Analysis Centre (TGAC) sequenced BACs, that constitute the MTP of barley using MatePair Pool Sequencing. The BAC Pools presented here could not be assigned to any barley chromosome and were therefore assinged 0H.

| PRJEB11992 | ENA

IBSC barley genomic MatePair Sequencing

Project description:IBSC barley genomic MatePair Sequencing BGI

| PRJEB10963 | ENA

SNP Discovery in Nine Lines of Cultivated Barley

Project description:Barley (Hordeum vulgare L.) is amongst the oldest domesticated crop plants and remains one of the world's most important crop species. It is diploid with a haploid genome of 5.1 gigabases (Gb), twice the size of those of human and maize, and closely related to the most widely grown crop, hexaploid wheat. To meet global demand for food, feed and fibre, it is commonly agreed that reference genome sequences of our crop plants are urgently required to enable genome-assisted crop improvement. As part of the The International Barley Genome Sequencing Consortium (IBSC) we present here raw data obtained from Illumina (GAII) sequencing of RNA samples from nine different barley cultivars for the purpose of Single Nucleotide Polymorphism (SNP) discovery.

2012-11-28 | E-MTAB-2764 | biostudies-arrayexpress

IWGSC Wheat Chromosome 7A BAC pools

Project description:IWGSC Wheat Chromosome 7A BACs sequenced in pools based on the physical map Minimum Tiling Path (MTP) with Illumina HiSeq 2500.

| PRJEB26029 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data