Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Salmonella Eko from various sources to attributed human illness in Nigeria by whole genome sequencing

ABSTRACT: Investigating Salmonella Eko from various sources in Nigeria by whole genome sequencing to identify the source of human infections

PROVIDER: PRJEB13610 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR1363526_analysis_DTU_CGE_all.tar.gz	Other
	ERR1363526_analysis_DTU_CGE_summarry.tsv	Tabular
	ERR1363527_analysis_DTU_CGE_all.tar.gz	Other
	ERR1363527_analysis_DTU_CGE_summarry.tsv	Tabular
	ERR1363528_analysis_DTU_CGE_all.tar.gz	Other

Items per page:

1 - 5 of 175

Similar Datasets

Bifidobacterium longum subsp. infantis transcriptomes in response to various nitrogen sources

Project description:Bifidobacterium longum subsp. infantis transcriptomes in response to various nitrogen sources

| PRJNA648387 | ENA

Transcriptional responses of yeast to preferred and non-preferred nitrogen sources in C-lim chemostat cultures

Project description:Aerobic, glucose-limited chemostat cultures of Saccharomyces cerevisiae grown with six different nitrogen sources were subjected to transcriptome analysis. The use of chemostats enabled an analysis of nitrogen-source-dependent transcriptional regulation at a fixed specific growth rate. A selection of preferred (ammonium and asparagine) and non-preferred (leucine, phenylalanine, methionine and proline) nitrogen sources was investigated. For each nitrogen source, distinct sets of genes were induced or repressed relative to the other five nitrogen sources. A total number of 131 of such ‘signature transcripts’ were identified in this study. In addition to signature transcripts, genes were identified that showed a transcriptional co-response to two or more of the six nitrogen sources. For example, 33 genes were transcriptionally up-regulated in leucine-, phenylalanine- and methionine-grown cultures, which was partly attributed to the involvement of common enzymes in the dissimilation of these amino acids. In addition to specific transcriptional responses elicited by individual nitrogen sources, their impact on global regulatory mechanisms such as nitrogen catabolite repression (NCR) could be monitored. NCR-sensitive gene expression in the chemostat cultures showed that, ammonia and asparagine were ‘rich’ nitrogen sources. By this criterion, leucine, proline and methionine were ‘poor’ nitrogen sources and phenylalanine showed an ‘intermediate’ NCR response. Keywords: Response to growth on various nitrogen source transcriptome

2007-02-28 | GSE6405 | GEO

Early response of three Pycnoporus species to various carbon sources [Pycnoporus sanguineus]

Project description:White-rot basidiomycete fungi are potent degraders of plant biomass with the ability to mineralize all lignocellulose components. Recent comparative genomics studies showed that these fungi use a wide diversity of enzymes for wood degradation. Deeper functional analyses are however necessary to understand the enzymatic mechanisms leading to lignocellulose breakdown. In the present study we analyzed the early response of the Polyporales fungi Pycnoporus coccineus CIRM-BRFM310, Pycnoporus cinnabarinus CIRM-BRFM137 and Pycnoporus sanguineus CIRM-BRFM 1264 to various carbon sources including lignocellulosic biomass.

2017-02-21 | GSE82433 | GEO

Early response of three Pycnoporus species to various carbon sources [Pycnoporus cinnabarinus]

2017-02-21 | GSE82427 | GEO

Early response of three Pycnoporus species to various carbon sources [Pycnoporus coccineus]

2017-02-21 | GSE82419 | GEO

Transcription profiling by array of Arabidopsis wild type and choride channel d-1 mutant seedlings grown on various nitrogen sources

Project description:wild-type and mutant seedlings were grown on various Nitrogen sources

2009-03-01 | E-MEXP-1770 | biostudies-arrayexpress

Thermoanaerobacter sp. X514 in various carbon sources

Project description:The sugar metabolic mechanism on glucose, xylose, fructose and cellobiose as the sole or dual carbon source by Thermoanaerobacter sp. X514 was characterized by whole genome cDNA micorarrays.

2011-02-01 | GSE24458 | GEO

Transcriptional profiling of Candida albicans SC5314 grown on different carbon and nitrogen sources

Project description:Goal of this study was to investigate the metabolic adaptation of C. albicans to different carbon sources (malic acid, α-ketoglutarate, proline) and nitrogen sources (dipeptides). As a control medium with glucose as carbon source and ammonium sulfate as nitrogen source was used. Transcriptional profiles were compared after 4 h incubation at 37°C.

2023-03-30 | GSE223317 | GEO

MICROME RNAseq from single carbon sources

Project description:As part of Microme, we have been investigating the effects of single carbon sources upon Salmonella Typhimurium and Salmonella Enteritidis. These strains have been grown in a defined medium, supplemented with single carbon sources, in order to determine which genes are expressed in the presence of which carbon sources.These data are part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see http://www.sanger.ac.uk/datasharing/

2014-08-20 | E-ERAD-227 | biostudies-arrayexpress

Transcriptional profiling of Candida auris B8441 (CAU30) grown on different carbon and nitrogen sources

Project description:Goal of this study was to investigate the metabolic adaptation of C. auris to different carbon sources (malic acid, α-ketoglutarate, proline) and nitrogen sources (dipeptides). As a control medium with glucose as carbon source and ammonium sulfate as nitrogen source was used. Transcriptional profiles were compared after 4 h incubation at 37°C.

2023-03-30 | GSE223318 | GEO