Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Niche partitioning of SOBs

ABSTRACT: Niche partitioning of diverse sulfur oxidizing bacteria at hydrothermal vents

PROVIDER: PRJEB15554 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	ERR1665230.fastq.gz	Fastqsanger.gz
	ERR1665240.fastq.gz	Fastqsanger.gz
	ERR1665250.fastq.gz	Fastqsanger.gz
	ERR1665260.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 67

Similar Datasets

Proteomics of Cycloclasticus endosymbiont of deep-sea mussel Bathymodiolus heckerae from Campeche Knolls, southern Gulf of Mexico

Project description:Bathymodiolin mussels are a group of bivalves associated with deep-sea reducing habitats, such as hydrothermal vents and cold seeps. These mussels usually engage in an obligatory symbiosis with sulfur and/or methane oxidizing Gammaproteobacteria. In addition to these bacteria, Bathymodiolus heckerae that inhabit gas and oil seeps in Campeche Bay, the southern Gulf of Mexico, host bacteria phylogenetically with the Cycloclasticus genus. We recently discovered the capability for short-chain alkane degradation in draft genomes of symbiotic Cycloclasticus. With proteomics, we investigated whether the genes required for this process are expressed by the symbionts.

2016-12-05 | PXD005351 | Pride

Proteomics of Candidatus Thiodiazotropha endoloripes, the chemosynthetic symbiont of the lucinid clam Loripes lucinalis from the Bay of Fetovaia

Project description:The Lucinidae is a large family of marine bivalves. They occur in diverse habitats from shallow-water seagrass sediments to deep-sea hydrothermal vents. All members of this family so far investigated host intracellular sulfur-oxidizing symbionts that belong to the Gammaproteobacteria. We recently discovered the capability for nitrogen fixation in draft genomes of the symbionts of Loripes lucinalis from the Bay of Fetovaia, Elba, Italy. With proteomics, we investigated whether the genes for nitrogen fixation are expressed by the symbionts.

2016-08-19 | PXD004536 | Pride

Dissolved organic carbon compounds in deep-sea hydrothermal vent fluids from the East Pacific Rise at 9°50′N

Project description:<p>Deep-sea hydrothermal vents are unique ecosystems that may release chemically distinct dissolved organic matter to the deep ocean. Here, we describe the composition and concentrations of polar dissolved organic compounds observed in low and high temperature hydrothermal vent fluids at 9°50′N on the East Pacific Rise. The concentration of dissolved organic carbon was 46 µM in the low temperature hydrothermal fluids and 14 µM in the high temperature hydrothermal fluids. In the low temperature vent fluids, quantifiable dissolved organic compounds were dominated by water-soluble vitamins and amino acids. Derivatives of benzoic acid and the organic sulfur compound 2,3-dihydroxypropane-1-sulfonate (DHPS) were also present in low and high temperature hydrothermal fluids. The low temperature vent fluids contain organic compounds that are central to biological processes, suggesting that they are a by-product of biological activity in the subseafloor. These compounds may fuel heterotrophic and other metabolic processes at deep-sea hydrothermal vents and beyond.</p>

2017-05-23 | MTBLS428 | MetaboLights

Specific archaeal niche partitioning among microbial communities at the micro-scale

Project description:Specific archaeal niche partitioning among microbial communities at the micro-scale

| PRJEB42913 | ENA

Specific archaeal niche partitioning among microbial communities at the micro-scale

Project description:Specific archaeal niche partitioning among microbial communities at the micro-scale

| PRJEB42914 | ENA

Specific archaeal niche partitioning among microbial communities at the micro-scale

Project description:Specific archaeal niche partitioning among microbial communities at the micro-scale

| PRJEB48864 | ENA

Bathymodiolus azoricus caging experiment

Project description:Colonization of deep-sea hydrothermal vents by invertebrates was made efficient through their adaptation to a symbiotic lifestyle with chemosynthetic bacteria, the primary producers of these ecosystems. Anatomical adaptations such as the establishment of specialized cells or organs have been evidenced in numerous deep-sea invertebrates. However, very few studies detailed global inter-dependencies between host and symbionts in these ecosystems. In this study, we proposed to describe, using a proteo-transcriptomic approach, the effects of symbionts on the deep-sea mussel Bathymodiolus azoricus’ molecular biology. We induced an in situ depletion of symbionts and compared the proteo-transcriptome of the gills of mussels in three conditions: symbiotic mussels (natural population), symbiont-depleted mussels and aposymbiotic mussels

2019-02-13 | GSE124699 | GEO

Hydrogenovibrio crunogenus XCL-2

Project description:Sulfur-oxidizing bacterium isolated from hydrothermal vent

| PRJNA13018 | ENA

Temporal and spatial niche partitioning in the retrotransposon community of the Drosophila genome

Project description:Temporal and spatial niche partitioning in the retrotransposon community of the Drosophila genome

| PRJEB75331 | ENA

Project description:Seagrass-associated sulfur oxidizing bacteria

| PRJNA574674 | ENA