Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Pseudomonas guariconensis LMG 27394

PROVIDER: PRJEB15687 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	FMYX01.dat.gz	Other
	FMYX01.fasta.gz	Fasta.gz
	FMYX01.master.dat	Other
	FMYX01.dat.gz	Other

Items per page:

1 - 4 of 4

Similar Datasets

Pseudomonas guariconensis strain:LMG 27394 | isolate:LMG 27394

Project description:Pseudomonas guariconensis LMG 27394 genome sequencing

| PRJNA323030 | ENA

Pseudomonas guariconensis

Project description:Pseudomonas guariconensis overview

| PRJNA681269 | ENA

Pseudomonas guariconensis strain:PA28P1

Project description:Pseudomonas guariconensis strain:PA28P1 Genome sequencing

| PRJNA880460 | ENA

Pseudomonas guariconensis strain:NY14324

Project description:Pseudomonas guariconensis strain:NY14324 Genome sequencing

| PRJNA1134354 | ENA

Pseudomonas guariconensis strain:ABJ_B2_1

Project description:Pseudomonas guariconensis strain:ABJ_B2_1 Genome sequencing

| PRJNA1183762 | ENA

Transcriptome profiling reveals the EanI/R quorum sensing regulon in Pantoea ananatis LMG 2665T

Project description:Background: Pantoea ananatis LMG 2665T synthesizes and utilizes acyl homoserine lactones (AHLs) for signaling. In this strain, short chain AHLs (C4 to C8) are produced by the EanI/R quorum sensing (QS) system that is involved in pathogenicity and biofilm formation. The complete set of genes regulated by the EanI/R system in P. ananatis LMG 2665T is still not fully known. In the present study, RNA-seq was used to analyze the transcriptome profiles controlled by the EanI/R system in this strain by comparing the wild type strain and its QS mutant 2665T ean∆I/R during lag and log stages. The RNA seq data was validated by RT qPCR. Results: The results showed that the EanI/R regulon in P. ananatis LMG 2665T comprised 144 genes, constituting 3.3% of the whole transcriptome under the experimental conditions in this study. The majority of genes regulated by the EanI/R system included genes for flagella assembly, bacterial chemotaxis, pyruvate metabolism, two component system, metabolic pathways, microbial metabolism and biosynthesis of secondary metabolites. Conclusions: This is the first study to identify the EanI/R QS regulon in P. ananatis LMG 2665T. Functional analysis of genes regulated the EanI/R system in LMG 2665T could help unveil genes that play a vital role in pathogenesis and survival strategies of this pathogen.

2018-10-31 | GSE87207 | GEO

Pseudomonas guariconensis strain:PA28B

Project description:Pseudomonas guariconensis strain:PA28B Genome sequencing and assembly

| PRJNA886385 | ENA

Pseudomonas guariconensis strain:PP15B

Project description:Pseudomonas guariconensis strain:PP15B Genome sequencing and assembly

| PRJNA886393 | ENA

Pseudomonas guariconensis strain:PA28P2

Project description:Pseudomonas guariconensis strain:PA28P2 Genome sequencing and assembly

| PRJNA886380 | ENA

Pseudomonas guariconensis strain:PP10A

Project description:Pseudomonas guariconensis strain:PP10A Genome sequencing and assembly