Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Eubacterium barkeri VPI 5359

PROVIDER: PRJEB16608 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	FNOU01.dat.gz	Other
	FNOU01.fasta.gz	Fasta.gz
	FNOU01.master.dat	Other
	FNOU01.dat.gz	Other

Items per page:

1 - 4 of 4

Similar Datasets

Eubacterium barkeri strain:vpi 5359

Project description:Eubacterium barkeri VPI 5359 genome sequencing

| PRJNA303816 | ENA

Transcriptomic profiles of M. barkeri Fusaro DSMZ804 and Pyr+ strains

Project description:The goal of this work was to elucidate the mechanism by which pyruvate is utilized as a substrate in a mutant strain of Methanosarcina barkeri Fusaro. In this study, using RNAseq we gained insight into how the mutant strain modulate its transcriptional profile in order to use pyruvate as a substrate. In addition, we obtained information on how methanogens respond to pyruvate at the transcriptional level. The mRNA from of Methanosarcina barkeri Fusaro DSMZ804 and Pyr+ strains grown on a variety of substrates (methanol, acetate, methanol-acetate, methanol-pyruvate, methanol-pyruvate-acetate) were harvested sequenced and mapped to M. barkeri genome. Pairwise comparisons between two cell lines of the Pyr+ strain and the DSMZ 804 strain were performed in all substrates tested.

2015-07-01 | E-GEOD-70370 | biostudies-arrayexpress

Shotgun proteomics of Cutibacterium granulosum VPI 0507

Project description:We performed shotgun proteomics on the bacterium Cutibacterium granulosum VPI 0507.

2021-04-26 | PXD021231 | Pride

Transcription profiling by array of Desulfovibrio vulgaris during the change from syntrophic growth with Methanosarcina barkeri to sulfidogenic metabolism

Project description:Global transcriptomics analysis of the Desulfovibrio vulgaris change from syntrophic growth with Methanosarcina barkeri to sulfidogenic metabolism

2010-07-03 | E-MTAB-304 | biostudies-arrayexpress

Modulation of mucosal immune responses to Clostridium difficile by peroxisome proliferator-activated receptor γ and microRNA-146b

Project description:BACKGROUND: miRNA have been shown to play an important role during immune-mediated diseases such as inflammatory bowel disease. The aim of this study was to assess differential expression of miRNA between uninfected and infected mice with Clostridium difficile strain VPI 10463 RESULTS: MicroRNA (miRNA)-sequencing analysis indicated that miR-146b, miR-1940, and miR-1298 were significantly overexpressed in colons of C. difficile-infected mice Colon of uninfected and C.difficile-infected C57BL6/J WT mice were sampled at day 4 post-infection with Clostridium difficile VPI 10463. The infection dose was 107 cfu/mouse.

2012-07-11 | E-GEOD-39235 | biostudies-arrayexpress

Project description:Methanosarcina barkeri

| PRJNA1125518 | ENA

RNA-seq analysis of Eubacterium limosum KIST612 across different carbon/energy/electron sources and growth phases.

Project description:To understand transcriptional regulation of Eubacterium limosum KIST612 across different carbon/energy/electron sources, RNAseq analysis was carried out over different substrate conditions (glucose, CO, H2/CO2).

2020-04-25 | GSE149269 | GEO

Neoseiulus barkeri

Project description:Neoseiulus barkeri overview

| PRJNA338333 | ENA

Microbacterium barkeri

Project description:Microbacterium barkeri overview

| PRJNA168190 | ENA

Modulation of mucosal immune responses to Clostridium difficile by peroxisome proliferator-activated receptor γ and microRNA-146b

2012-07-11 | GSE39235 | GEO