Project description:Investigation of whole genome gene expression level changes in Lactococcus lactis KCTC 3769T,L. raffinolactis DSM 20443T, L. plantarum DSM 20686T, L. fujiensis JSM 16395T, L. garvieae KCTC 3772T, L. piscium DSM 6634T and L. chungangensis CAU 28T . This proves that transcriptional profiling can facilitate in elucidating the genetic distance between closely related strains.
Project description:Description: This entry contains 6 raw files. Experiment setup: Immunoaffinity purification of YFP-ERECTA from Arabidopsis thaliana. Two independent experiments conducted in 2013: first experiment has one sample and second experiment has two sample replicates. For each sample, purified YFP-ERECTA was separately digested with trypsin and chymotrypsin. LC-MS/MS analysis on a Thermo LTQ-Velos Orbitrap. MS in the orbitrap and MS/MS in the ion trap. Torii's lab provided purified YFP-ERECTA. Villen lab conducted proteomic sample preparation and MS analysis to identify phosphosites. Full search results provided (unfiltered).
raw file sample;
07090.raw YFP-ERECTA trypsin;
07091.raw YFP-ERECTA chymotrypsin;
07462.raw YFP-ERECTA trypsin;
07463.raw YFP-ERECTA chymotrypsin;
07465.raw YFP-ERECTA trypsin;
07466.raw YFP-ERECTA chymotrypsin;
Project description:Investigation of whole genome gene expression level changes in Lactococcus lactis KCTC 3769T,L. raffinolactis DSM 20443T, L. plantarum DSM 20686T, L. fujiensis JSM 16395T, L. garvieae KCTC 3772T, L. piscium DSM 6634T and L. chungangensis CAU 28T . This proves that transcriptional profiling can facilitate in elucidating the genetic distance between closely related strains. A one chip study using total RNA recovered from of L. raffinolactis DSM 20443T, L. plantarum DSM 20686T, L. fujiensis JSM 16395T, L. garvieae KCTC 3772T, L. piscium DSM 6634T and L. chungangensis CAU 28T . For the the transcriptome of of L. raffinolactis DSM 20443T, L. plantarum DSM 20686T, L. fujiensis JSM 16395T, L. garvieae KCTC 3772T, L. piscium DSM 6634T and L. chungangensis CAU 28T was analyzed using the Lactococcus lactis KCTC 3769T microarray platform
Project description:The expression profile of C. autoethanogenum DSM 10061 grown autotrophically with H2:CO:CO2 under visible light at an intensity of 4200 lux versus the expression profile of C. autoethanogenum DSM 10061 grown autotrophically in the dark
