Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Burkholderia terricola LMG 20594

PROVIDER: PRJEB18329 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	FRAB01.dat.gz	Other
	FRAB01.fasta.gz	Fasta.gz
	FRAB01.master.dat	Other
	FRAB01.dat.gz	Other

Items per page:

1 - 4 of 4

Similar Datasets

Paraburkholderia terricola strain:LMG 20594 | isolate:LMG 20594

Project description:Burkholderia terricola LMG 20594 genome sequencing

| PRJNA323256 | ENA

Conservation genomics reveals pesticide and pathogen exposure in the declining bumblebee Bombus terricola

Project description:We use high-thoughput RNA sequencing to investigate the stressors experienced by the vulnerable Bombus terricola near agricultural areas.

2021-06-25 | GSE174536 | GEO

Transcriptome profiling reveals the EanI/R quorum sensing regulon in Pantoea ananatis LMG 2665T

Project description:Background: Pantoea ananatis LMG 2665T synthesizes and utilizes acyl homoserine lactones (AHLs) for signaling. In this strain, short chain AHLs (C4 to C8) are produced by the EanI/R quorum sensing (QS) system that is involved in pathogenicity and biofilm formation. The complete set of genes regulated by the EanI/R system in P. ananatis LMG 2665T is still not fully known. In the present study, RNA-seq was used to analyze the transcriptome profiles controlled by the EanI/R system in this strain by comparing the wild type strain and its QS mutant 2665T ean∆I/R during lag and log stages. The RNA seq data was validated by RT qPCR. Results: The results showed that the EanI/R regulon in P. ananatis LMG 2665T comprised 144 genes, constituting 3.3% of the whole transcriptome under the experimental conditions in this study. The majority of genes regulated by the EanI/R system included genes for flagella assembly, bacterial chemotaxis, pyruvate metabolism, two component system, metabolic pathways, microbial metabolism and biosynthesis of secondary metabolites. Conclusions: This is the first study to identify the EanI/R QS regulon in P. ananatis LMG 2665T. Functional analysis of genes regulated the EanI/R system in LMG 2665T could help unveil genes that play a vital role in pathogenesis and survival strategies of this pathogen.

2018-10-31 | GSE87207 | GEO

Project description:Burkholderia hospita LMG 20598

| PRJEB15779 | ENA

Project description:Burkholderia phenazinium LMG 2247

| PRJEB15886 | ENA

Project description:Burkholderia aspalathi LMG 27731

| PRJEB17575 | ENA

Project description:Burkholderia sartisoli LMG 24000

| PRJEB16664 | ENA

Project description:Burkholderia caballeronis LMG 26416

| PRJEB16858 | ENA

Project description:Burkholderia megapolitana LMG 23650