Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Solanum americanum clone 954750186 Nanopore MinION RenSeq

ABSTRACT: Oxford Nanopore MinION resistance-gene enrichment sequencing of Solanum americanum clone 954750186

PROVIDER: PRJEB18993 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR1795437.fastq.gz	Fastqsanger.gz

Items per page:

1 - 1 of 1

Similar Datasets

Solanum americanum clone 954750186 Nanopore RenSeq

Project description:Solanum americanum clone 954750186 Nanopore resistance-gene enrichment sequencing (RenSeq).

| PRJEB21483 | ENA

Solanum americanum clone 954750186 RenSeq: MinION-Canu

Project description:Solanum americanum clone 954750186 Nanopore resistance-gene enrichment sequencing (RenSeq). Canu assembly of Nanopore data.

| PRJEB21469 | ENA

Solanum americanum clone 954750186 RenSeq: MinION-Canu-nanopolish

Project description:Solanum americanum clone 954750186 Nanopore resistance-gene enrichment sequencing (RenSeq). Canu assembly and nanopolish polishing of Nanopore data.

| PRJEB21470 | ENA

Solanum americanum clone 954750186 RenSeq: MinION-Canu-nanopolish-pilon

Project description:Solanum americanum clone 954750186 Nanopore resistance-gene enrichment sequencing (RenSeq). Canu assembly, nanopolish polishing and pilon repair of Nanopore data.

| PRJEB21471 | ENA

Solanum americanum clone 954750186 RenSeq: PacBio-Canu

Project description:Solanum americanum clone 954750186 SMRT resistance-gene enrichment sequencing (RenSeq). Canu assembly of PacBio data.

| PRJEB21472 | ENA

Solanum americanum clone 954750186 RenSeq: PacBio-HGAP

Project description:Solanum americanum clone 954750186 SMRT resistance-gene enrichment sequencing (RenSeq). HGAP assembly of PacBio data.

| PRJEB21467 | ENA

Solanum americanum clone 954750186 RenSeq: PacBio-Geneious R8

Project description:Solanum americanum clone 954750186 SMRT resistance-gene enrichment sequencing (RenSeq). Geneious R8 assembly of PacBio data.

| PRJEB21468 | ENA

Oxford Nanopore MinION sequencing of multiplex PCR amplified, pathogen-spiked blood and plasma samples

Project description:To evaluate targeted MinION next generation sequencing as a diagnostic method for detection of pathogens in human blood and plasma, human blood or plasma samples were spiked with measured amounts of viruses, bacteria, protozoan parasites or tested pathogen-free as negative controls. Nucleic acid was extracted from samples and PCR amplification performed in multiplex primer pools with a procedure described in ArrayExpress experiment submission ID 18379. The PCR products were used for library preparation. The libraries sequenced on an Oxford Nanopore MinION. The passed reads aligned with a custom reference file to determine the identity of the pathogen in the sample.

2024-06-08 | E-MTAB-14011 | biostudies-arrayexpress

Solanum americanum clone 954750186 RenSeq: PacBio-HGAP

Project description:DELETE

| PRJEB21465 | ENA

S. americanum RenSeq

Project description:Resistance gene enrichment (RenSeq) on gDNA and cDNA of Solanum americanum

| PRJEB9915 | ENA