Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Sand filter Crenothrix polyspora

ABSTRACT: Crenothrix polyspora sand filter metagenomics project

PROVIDER: PRJEB19189 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	FUKI01.dat.gz	Other
	FUKI01.fasta.gz	Fasta.gz
	FUKI01.master.dat	Other
	FUKJ01.dat.gz	Other
	FUKJ01.fasta.gz	Fasta.gz

Items per page:

1 - 5 of 8

Similar Datasets

Sand filter backwashing

Project description:Sand filter backwashing Raw sequence reads

| PRJNA764307 | ENA

Sludge from slow sand filter

Project description:Sludge from slow sand filter Raw sequence reads

| PRJNA773934 | ENA

Sand filter microbial community

Project description:Microbial community composition of a household sand filter used for arsenic, iron, and manganese removal from groundwater in Vietnam

| PRJEB8996 | ENA

Polyspora axillaris

Project description:Polyspora axillaris overview

| PRJNA1057389 | ENA

sand metagenome

Project description:Horizontal Slow Sand Filter Microbiome Raw sequence reads

| PRJNA351777 | ENA

Polyspora axillaris

Project description:Polyspora axillaris Raw sequence reads

| PRJNA1043575 | ENA

Barcode17 filter 16SrRNA

Project description:Barcode17 filter 16SrRNA

| PRJEB33015 | ENA

Comparison of cultured and sand fly-derived promastigotes by means of RNA-Seq

Project description:A laboratory colony of Phlebotomus perniciosus sand flies was maintained. Sand flies were infected with cultured Leishmania infantum promastigotes in stationary phase. Ten infected sand flies were dissected after 5 days and promastigotes within the gut pooled. The cells were immediately washed in PBS once and lysed in TRIzol reagent (Life Technologies). RNA isolation was completed according to the manufacturer's instructions, obtaining 63ng. RNA-seq libraries were generated using the spliced leader sequence for second strand synthesis (Cuypers et al., 2017; Haydock et al., 2015), thus allowing for specific amplification of sequences from L. infantum promastigotes, thus avoiding contamination with material from the sand fly gut. Single-end sequencing was performed in an Illumina HiSeq2500 instrument and data analysis was conducted using bowtie2, samtools, featureCounts and Geneious. The main findings are: i) substantial differences in differential gene expression between sand fly-derived (sfPro) and cultured (acPro) promastigotes; and ii) over-expression of genes involved in metacyclogenesis in sfPro vs. acPro, including gp63 genes, autophagy genes, etc.

2018-08-15 | GSE102668 | GEO

Synergism of Iraqi Sand/Cigarette Smoke Co-Exposure in Rats

Project description:Synergism of Iraqi Sand/Cigarette Smoke Co-Exposure in Rats. 24 samples are used.

2012-01-01 | GSE28804 | GEO

PHPS filter metagenome

Project description:PHPS filter metagenome Metagenomic assembly

| PRJNA732977 | ENA