Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Island AMF

ABSTRACT: Arbuscular mycorrhizal communities on islands worldwide

PROVIDER: PRJEB20015 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	ERR1929440.fastq.gz	Fastqsanger.gz
	ERR1929580.fastq.gz	Fastqsanger.gz
	ERR1929620.fastq.gz	Fastqsanger.gz
	ERR1929630.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 212

Similar Datasets

Mangrove AMF

Project description:Arbuscular mycorrhizal fungi in mangrove Islands of Kerala.

| PRJEB49405 | ENA

AMF

Project description:Arbuscular mycorrhizal fungal community Raw sequence reads

| PRJNA427445 | ENA

AMF in hedgerows

Project description:Characterization of arbuscular mycorrhizal fungal communities associated with hedgerows.

| PRJEB51088 | ENA

Small RNA sequencing in tomato roots with and without Rhizophagus irregularis

Project description:Arbuscular mycorrhizal symbiosis is a predominant relationship between plant and arbuscular mycorrhizal fungi. To idendify arbuscular mycorrhiza responsive miRNAs, small RNA libraries were constructed in tomato roots colonized with Rhizophagus irregularis and without Rhizophagus irregularis. We identify miRNAs in tomato roots and provide a new profile of tomato miRNAs. And we found that some miRNAs were responsive to arbuscular mycorrhiza by comparing miRNAs in treatment with that in control.

2016-07-20 | GSE76204 | GEO

Small RNA sequencing in tomato roots with and without Rhizophagus irregularis

2016-07-20 | E-GEOD-76204 | biostudies-arrayexpress

Gene expression data from arbuscular mycorrhizal and phosphate-treated Medicago truncatula roots.

Project description:Arbuscular mycorrhiza (AM) interactions between plants and Glomeromycota fungi primarily support phosphate aquisition of most terrestrial plant species. To unravel gene expression in Medicago truncatula root colonization by AM fungi, we used genome-wide transcriptome profiling based on whole mycorrhizal roots. We used GeneChips to detail the global programme of gene expression in response to colonization by arbuscular mycorrhizal fungi and in response to a treatment with phosphate and identified genes differentially expressed during this process. Medicago truncatula roots were harvested at 28 days post inoculation with the two different arbuscular mycorrhizal fungi Glomus intraradices (Gi-Myc) and Glomus mosseae (Gm-Myc) under low phosphate conditions (20 µM phosphate) or after a 28 days treatment with 2 mM phosphate in the absence of arbuscular mycorrhizal fungi (2mM-P). As a control, uninfected roots grown under low phosphate conditions (20 µM phosphate) were used (20miM-P). Three biological replicates consisting of pools of five roots were used for RNA extraction and hybridization on Affymetrix GeneChips.

2011-10-28 | E-GEOD-32208 | biostudies-arrayexpress

Effects of arbuscular mycorrhizal symibiosis on gene expression in the foxtail millet roots

Project description:To investigate the involvement of arbuscular mycorrhizal symbiosis in the moleular regulation in foxtail millet roots and the effects of genetic variation on AMS-mediated molecular regulation, we isolated total RNA from the roots of 3 different landraces for comprehensive transcriptomic analysis. We then performed gene expression profiling analysis using data obtained from RNA-seq of 3 different landraces (Hanevalval, TT8, ICE36) after 6-week mock or arbuscular mycorrhizal fungi treatments.

2022-10-20 | GSE213843 | GEO

Rhizobial and non/mycorrhizal Medicago truncatula roots and shoots transcriptome

Project description:Plant species posses a special set of genes functional only in arbuscular mycorrhizal symbiosis. So, the model plant Medicago truncatula (Jemalong 5) was used for transcriptome comparative analysis while infected with compatible rhizobia Sinorhizobium meliloti (strain 10) and with or without arbuscular mycorrhizal fungus Rhizophagus irregularis (SYM5). Whole shoot and whole root were used for RNA isolation and processed via one of the European certified Affymetrix core labs (http://core.img.cas.cz).

2019-04-21 | GSE126833 | GEO

rules of AMF community assembly in grasses

Project description:Past spatial structure of plant communities determines of arbuscular mycorrhizal fungal community assembly

| PRJEB26688 | ENA

Gene expression data from arbuscular mycorrhizal and phosphate-treated Medicago truncatula roots.

2011-10-29 | GSE32208 | GEO