Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Soil-wood interactions: influence of decaying logs on composition of soil fungal communities

ABSTRACT: Soil-wood interactions: influence of decaying logs on composition of soil fungal communities

PROVIDER: PRJEB20576 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR1949610_1.fastq.gz	Fastqsanger.gz
	ERR1949610_2.fastq.gz	Fastqsanger.gz
	ERR1949620_1.fastq.gz	Fastqsanger.gz
	ERR1949620_2.fastq.gz	Fastqsanger.gz
	ERR1949630_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 374

Similar Datasets

Transcriptome analysis of pine wood decaying mechanism of Sparassis latifolia

Project description:To explore the pine wood decaying mechanism of Sparassis latifolia, we use RNA-seq to detect the gene expression.

2022-11-23 | GSE173822 | GEO

decaying-wood

Project description:metagenome of microorganis inhabiting decaying wood

| PRJEB6338 | ENA

Fungal diversity in decaying logs and stumps

Project description:Fungal diversity and niche differentiation in decaying logs and stumps

| PRJEB18707 | ENA

wood decay metagenome

Project description:Decaying Picea abies logs Metagenome

| PRJNA285725 | ENA

GNPS - phytochemical biotransformation by wood decaying fungi

Project description:LC-MSe data of phytochemical biotransformation by wood decaying fungi

2022-12-06 | MSV000090841 | GNPS

Succession and functioning of bacterial and fungal communities in decaying wood

Project description:Succession and functioning of bacterial and fungal communities in decaying wood

| PRJEB20577 | ENA

Enzymatic machinery of wood-inhabiting fungi that degrade temperate tree species

Project description:Deadwood plays a crucial role in forest ecosystems, but we have limited information about the specific fungal taxa and extracellular lignocellulolytic enzymes that are actively involved in the decomposition process in situ. To investigate this, we studied the fungal metaproteome of twelve deadwood tree species in a replicated, eight-year experiment. Key fungi observed included genera of white-rot fungi (Basidiomycota, e.g. Armillaria, Hypholoma, Mycena, Ischnoderma, Resinicium), brown-rot fungi (Basidiomycota, e.g. Fomitopsis, Antrodia), diverse Ascomycota including xylariacous soft-rot fungi (e.g. Xylaria, Annulohypoxylon, Nemania) and various wood-associated endophytes and saprotrophs (Ascocoryne, Trichoderma, Talaromyces). These fungi used a whole range of extracellular lignocellulolytic enzymes, such as peroxidases, peroxide-producing enzymes, laccases, cellulases, glucosidases, hemicellulases (xylanases) and lytic polysaccharide monooxygenases (LPMOs). Both the fungi and enzymes were tree-specific, with specialists and generalists being distinguished by network analysis. The extracellular enzymatic system was highly redundant, with many enzyme classes of different origins present simultaneously in all decaying logs. Strong correlations were found between peroxide-producing enzymes (oxidases) and peroxidases as well as LPMOs, and between ligninolytic, cellulolytic and hemicellulolytic enzymes. The overall protein abundance of lignocellulolytic enzymes was reduced by up to -30% in gymnosperm logs compared to angiosperm logs, and gymnosperms lacked ascomycetous enzymes, which may have contributed to the lower decomposition of gymnosperm wood. In summary, we have obtained a comprehensive and detailed insight into the enzymatic machinery of wood-inhabiting fungi in several temperate forest tree species, which can help to improve our understanding of the complex ecological processes in forest ecosystems.

2024-04-22 | PXD041962 | Pride

Fungal communities in decaying wood

Project description:Variation in wood decay rates in naturally colonized stumps: effect of moisture content and fungal community composition

| PRJEB4497 | ENA

Fungi in decaying wood analysed by 454-sequencing

Project description:Habitat models of wood-inhabiting fungi along a decay gradient of Norway spruce logs

| PRJEB8282 | ENA

Transcriptome analysis of pine wood decaying mechanism of Sparassis latifolia

Project description:Transcriptome analysis of pine wood decaying mechanism of Sparassis latifolia

| PRJNA727221 | ENA