Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Wheat Blast Bangladesh 2017

ABSTRACT: RNA-Seq reads from wheat blast field samples from Bangladesh collected in March, 2017

PROVIDER: PRJEB20582 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR1954080_1.fastq.gz	Fastqsanger.gz
	ERR1954080_2.fastq.gz	Fastqsanger.gz
	ERR1954090_1.fastq.gz	Fastqsanger.gz
	ERR1954090_2.fastq.gz	Fastqsanger.gz
	ERR1954100_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 60

Similar Datasets

Field Pathogenomics of Rice Blast

Project description:Field pathogenomics identifies lineages of Magnaporthe oryzae in rice leaf samples with blast symptoms collected from Italy, Philippines, and Bangladesh

| PRJEB26891 | ENA

Transcriptome analysis of rice (Oryza sativa) infected with blast fungus (Magnaporthe oryzae)

2011-05-31 | GSE16470 | GEO

Wheat Blast - Zambia 2018-2022

Project description:Illumina short reads from Zambian wheat blast epidemic 2018-2020

| PRJEB53707 | ENA

Wheat blast epidemic in Zambia 2018-2020

Project description:Wheat blast fungus from Zambia

| PRJEB43836 | ENA

Transcriptome analysis of rice (Oryza sativa) infected with blast fungus (Magnaporthe oryzae)

Project description:Rice blast is one of the most serious diseases and is caused by Magnaporthe grisea. SHZ-2, an indica cultivar with broad spectrum resistance to multiple races of the blast pathogen, was crossed to TXZ-13, a blast susceptible but high-quality variety, to produce one BC3 line, BC10 line, which showed strong to moderate blast resistance over eight cropping seasons in the field. In this study, we compared the transcription between blast-resistant and -susceptive lines by custom microarray. Keywords: time course, blast infection, disease response Comparison between blast- and mock-infected rice. Biological replicates: 3 control (mock) and 3 blast-infected at each time point, independently grown and harvested at 24 and 48 hours after inoculation. Each sample was prepared with whole plant 5 cm above ground and was pooled from 5 plants grown under the same conditions.

2011-05-31 | E-GEOD-16470 | biostudies-arrayexpress

Field studies of Cryptosporidiosis and Enteropathogens in Bangladesh

Project description:Field studies of Cryptosporidiosis and Enteropathogens in Bangladesh

| PRJNA1123773 | ENA

Field studies of Cryptosporidiosis and Enteropathogens in Bangladesh

Project description:Field studies of Cryptosporidiosis and Enteropathogens in Bangladesh

| PRJNA493159 | ENA

Wheat Blast in Bangladesh: The Current Situation and Future Impacts.

Project description:Wheat blast occurred in Bangladesh for the first time in Asia in 2016. It is caused by a fungal pathogen, Magnaporthe oryzae Triticum (MoT) pathotype. In this review, we focused on the current status of the wheat blast in regard to host, pathogen, and environment. Despite the many efforts to control the disease, it expanded to neighboring regions including India, the world's second largest wheat producer. However, the disease occurrence has definitely decreased in quantity, because of many farmers chose to grow alternate crops according to the government's directions. Bangladesh government planned to introduce blast resistant cultivars but knowledges about genetics of resistance is limited. The genome analyses of the pathogen population revealed that the isolates caused wheat blast in Bangladesh are genetically close to a South American lineage of Magnaporthe oryzae. Understanding the genomes of virulent strains would be important to find target resistance genes for wheat breeding. Although the drier winter weather in Bangladesh was not favorable for development of wheat blast before, recent global warming and climate change are posing an increasing risk of disease development. Bangladesh outbreak in 2016 was likely to be facilitated by an extraordinary warm and humid weather in the affected districts before the harvest season. Coordinated international collaboration and steady financial supports are needed to mitigate the fearsome wheat blast in South Asia before it becomes a catastrophe.

| S-EPMC6385656 | biostudies-literature

Field Studies of Human Immunity to Amebiasis in Bangladesh

Project description:Field Studies of Human Immunity to Amebiasis in Bangladesh

| PRJNA1123776 | ENA

Field Studies of Human Immunity to Amebiasis in Bangladesh

Project description:Field Studies of Human Immunity to Amebiasis in Bangladesh

| PRJNA416031 | ENA