Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Whole genome sequencing and analysis of Enterobacteriaceae isolates from Ireland

PROVIDER: PRJEB21277 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR2004730_1.fastq.gz	Fastqsanger.gz
	ERR2004730_2.fastq.gz	Fastqsanger.gz
	ERR2004740_1.fastq.gz	Fastqsanger.gz
	ERR2004740_2.fastq.gz	Fastqsanger.gz
	ERR2004750_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 960

Similar Datasets

Project description:Whole genome sequencing and analysis of Streptococcus isolates from Ireland

| PRJEB38726 | ENA

Project description:Whole genome sequencing and analysis of bacterial isolates from Ireland

| PRJEB34287 | ENA

Project description:Whole genome sequencing and analysis of Neisseria meningitidis isolates from Ireland

| PRJEB7520 | ENA

Project description:Whole genome sequencing and analysis of Escherichia coli isolates from Ireland

| PRJEB11358 | ENA

Project description:Whole genome sequencing of bacterial isolates from Ireland

| PRJEB44349 | ENA

Streptococcal isolates in Ireland

Project description:Whole genome sequencing of streptococcal isolates from Ireland

| PRJEB74511 | ENA

A multicenter translational biomarker phase II trial of regorafenib in patients with non-resectable pretreated colorectal cancer.

Project description:Primary objectives: The primary objective is to investigate circulating tumor DNA (ctDNA) via deep sequencing for mutation detection and by whole genome sequencing for copy number analyses before start (baseline) with regorafenib and at defined time points during administration of regorafenib for treatment efficacy in colorectal cancer patients in terms of overall survival (OS). Primary endpoints: circulating tumor DNA (ctDNA) via deep sequencing for mutation detection and by whole genome sequencing for copy number analyses before start (baseline) with regorafenib and at defined time points during administration of regorafenib for treatment efficacy in colorectal cancer patients in terms of overall survival (OS).

| 2533916 | ecrin-mdr-crc

Project description:Whole genome sequencing of M. tuberculosis complex isolates in Ireland

| PRJEB60052 | ENA

Transcriptomic analysis of gnotobiotic Aedes aegypti mosquitoes

Project description:We compare the transcriptome of gnotobiotic Ae. aegypti generated by contaminating axenic (bacteria-free) larvae with bacterial isolates found in natural mosquito breeding sites. We focused on four bacterial isolates (Lysobacter, Flavobacterium, Paenibacillus and Enterobacteriaceae) and found that different gnotobiotic treatments resulted in massive transcriptomic changes throughout the mosquito development.

2021-12-15 | GSE173472 | GEO

Comparison of genomes and proteomes of whole genome-sequenced Campylobacter jejuni from different phylogenetic backgrounds

Project description:We performed whole genome sequencing on four isolates of C. jejuni, two of which were closely related phylogenetically while the remaining two were phylogenetically divergent. Genomes were closed and finished. 4-plex iTRAQ experiments were performed on the four isolates after growth on solid medium for a standard time. The research questions were: 1) how closely do the protein profiles match among the four isolates, and 2) were there any results consistent with differences in regulation among isolates.

2017-08-04 | MSV000081410 | MassIVE

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data