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ABSTRACT: Marinobacter sp. ES.048

PROVIDER: PRJEB21430 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
	FYFA01.dat.gz	Other
	FYFA01.fasta.gz	Fasta.gz
	FYFA01.master.dat	Other
	FYFA01.dat.gz	Other

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Marinobacter sp. es.048

Project description:Marinobacter sp. ES.048 genome sequencing

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Phenotypic responses to interspecies competition and commensalism in a naturally-derived microbial co-culture

Project description:Testing of response of hetertrophic partners (Halomonas sp. HL-48 and Marinobacter sp. HL-58) to both axenic and co-culture growth using both glucose and xylose

2017-09-13 | GSE103773 | GEO

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The volatilomes of Symbiodiniaceae-associated bacteria are influenced by chemicals derived from their algal partners

Project description:Samples are from bacterial cultures of axenic Labrenzia sp. 21p or Marinobacter adhaerens that were incubated in either Symbiodiniaceae (algae) exudate or blank IMK medium.

2019-10-07 | MSV000084431 | MassIVE

RNAseq of human Ewing, MSC, fibroblast cell lines - A side population of Ewing cells exhibits stem cell properties

Project description:Ewings Sarcoma (ES) belongs to the group of bone cancers defined by the existence of a certain EWS-ETS fusion gene. In this study we use the model cell line CADO-ES1 (EWSR1-ERG fusion gene) to characterize the tumor biology of a versatile ES side-population (SP). We aim to compare SP- and non-SP-cells to identify specific characteristics of the SP which points towards a tumor driving functionality of the SP. Due to some stem cell like properties of the SP fraction a comparison to MSCs and normal fibroblasts as a control are also performed.

2017-10-31 | E-MTAB-6067 | biostudies-arrayexpress

Comparative proteomics of Marinobacter sp. TT1 reveals Corexit impacts on hydrocarbon metabolism, chemotactic motility and biofilm formation

Project description:The application of chemical dispersants during marine oil spills can affect the community composition and activity of native marine microorganisms. Several studies have indicated that certain marine hydrocarbon-degrading bacteria, such as Marinobacter spp., can be inhibited by chemical dispersants, resulting in lower abundances and/or reduced hydrocarbon-biodegradation rates. In this respect, a major knowledge gap exists in understanding the mechanisms underlying these observed physiological effects. Here, we performed comparative proteomics of the Deepwater Horizon isolate Marinobacter sp. TT1 grown under different conditions that varied regarding the supplied carbon sources (pyruvate vs. n-hexadecane) and whether or not dispersant (Corexit EC9500A) was added, or that contained crude oil in the form of a water-accommodated fraction (WAF) or chemically-enhanced WAF (CEWAF). We characterized the proteins associated with alkane metabolism and alginate biosynthesis in strain TT1, report on its potential for aromatic hydrocarbon biodegradation and present a proposed metabolism of Corexit components as carbon substrates for the strain. Our findings implicate Corexit in affecting hydrocarbon metabolism, chemotactic motility, biofilm formation, and inducing solvent tolerance mechanisms like efflux pumps in strain TT1. This study provides novel insights into dispersant impacts on microbial hydrocarbon degraders that should be taken into consideration for future oil spill response actions.

2020-12-22 | PXD021108 | Pride

Ranking of nanomaterial potency to induce pathway perturbations associated with lung (Day 28, Group 1)

Project description:This experiment examined the the lung transcriptomic responses to single intratracheal instillation of NRCWE-046, NRCWE-047, NRCWE-048 and NRCWE-049 (CNT).

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