Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Horse BMDM +/- LPS

ABSTRACT: RNA sequencing of horse (Equus caballus) bone marrow derived macrophages (BMDMs), both unstimulated and 7 hours after stimulation with lipopolysaccharide (LPS).

PROVIDER: PRJEB22537 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR2116850_1.fastq.gz	Fastqsanger.gz
	ERR2116850_2.fastq.gz	Fastqsanger.gz
	ERR2116860_1.fastq.gz	Fastqsanger.gz
	ERR2116860_2.fastq.gz	Fastqsanger.gz
	ERR2116870_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 84

Similar Datasets

Rat BMDM +/- LPS

Project description:RNA sequencing of rat (Rattus norvegicus) bone marrow derived macrophages (BMDMs), both unstimulated and 7 hours after stimulation with lipopolysaccharide (LPS).

| PRJEB22553 | ENA

Chicken BMDM +/- LPS

Project description:RNA sequencing of chicken (Gallus gallus) bone marrow derived macrophages (BMDMs), both unstimulated and 24 hours after stimulation with lipopolysaccharide (LPS).

| PRJEB22373 | ENA

Pig BMDM +/- LPS

Project description:RNA sequencing of pig (Sus scrofa) bone marrow derived macrophages (BMDMs), both unstimulated and 7 hours after stimulation with lipopolysaccharide (LPS).

| PRJEB22536 | ENA

Cattle BMDM +/- LPS

Project description:RNA sequencing of cattle (Bos taurus) bone marrow derived macrophages (BMDMs), both unstimulated and 7 hours after stimulation with lipopolysaccharide (LPS).

| PRJEB22535 | ENA

Equus caballus breed:Lipizzan Horse

Project description:Equus caballus breed:Lipizzan Horse Genome sequencing

| PRJNA357976 | ENA

Equus caballus breed:Mongolian horse

Project description:Equus caballus breed:Mongolian horse Raw sequence reads

| PRJNA572563 | ENA

Equus caballus breed:Warmblood Horse

Project description:Equus caballus breed:Warmblood Horse Transcriptome or Gene expression

| PRJNA306540 | ENA

Equus caballus breed:Peruvian Paso Horse

Project description:Whole genome sequence of the Peruvian Paso Horse (Equus caballus)

| PRJNA1149496 | ENA

Whole transcriptome analyses of six thoroughbred horses before and after exercising using RNA-Seq

Project description:We sequenced the whole mRNA of six thoroughbred horse (Equus caballus) blood and muscle tissues before and after exercising, generating a total of 1.3 billion short reads with 90-bp pair-end sequences from 24 samples. Comparing with current genome annotation, we identified 32,361 unigene clusters spanning 51.83 Mb that contained 11,933 (36.87%) annotated genes. More than 60% (20,428) unigene clusters did not match any current equine gene model. We identified 189,973 single nucleotide variations (SNVs) from the aligned sequences against the horse reference. Most SNVs (171,558 SNVs; 90.31%) were novel compared with over 1.1 million equine SNPs from two databases. Some genes have significantly different expression levels under different environment. We define those identical genes which have different expression levels are ‘differentially expressed’ and carried out differentially expressed gene analysis before and after exercise conditions. We discovered, 62 up- and 80 down-regulated genes in the blood and 878 up- and 285 down-regulated genes in the muscle from the 24 samples. Six out of 28 previously exercise-related known genes, HIF1A, ADRB2, PPARD, VEGF, TNC, and BDNF, were highly expressed in the muscle after exercise. We discovered 56 functionally unknown transcription factors that are probably associated with an early regulatory exercise mechanism from 91 differentially expressed transcription factors. We found interesting RNA expression patterns where different alternative splicing forms of the same gene showed reversed expressions before and after exercising. whole mRNA sequencing profiles of six thoroughbred horse (Equus caballus) blood and muscle tissues before and after exercising

2013-05-01 | E-GEOD-37870 | biostudies-arrayexpress

Equus caballus breed:Chakouyi horse | cultivar:local breed

Project description:Equus caballus breed:Chakouyi horse | cultivar:local breed Raw sequence reads

| PRJNA1071533 | ENA