Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Raw variant calls within the sheep genomes project

PROVIDER: PRJEB23487 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	raw_variant_calls_sheep.vcf.gz	Vcf
	raw_variant_calls_sheep.vcf.gz.tbi	Vcf

Items per page:

1 - 2 of 2

Similar Datasets

Project description:Raw variant calls from the Sheep genomes project - Run 1

| PRJEB14684 | ENA

Project description:High quality variant calls from the Sheep genomes project - Run1

| PRJEB14685 | ENA

Project description:High quality variant calls from mutliple dog genome project - Run1

| PRJEB24066 | ENA

Project description:High quality variant calls from multiple horse genome project -Run1

| PRJEB28306 | ENA

Project description:High quality variant calls from mutliple dog genome project - Run2

| PRJEB32865 | ENA

hMPXV Filtered Variant Calls (VEO Taskforce)

Project description:Filtered variant calls of public MPXV reads

| PRJEB55823 | ENA

A first comparative map of copy number variations in the sheep genome

Project description:We carried out a cross species cattle-sheep array comparative genome hybridization (aCGH) experiment in order to identify copy number variations (CNVs) in the sheep genome analysing animals of Italian dairy breeds (Sarda, Bagnolese, Laticauda, Massese and Valle del Belice) using a tiling oligonucleotide array with ~385,000 probes designed on the bovine genome. We identified 135 CNV regions (CNVRs) covering about 10.5 Mb of the virtual sheep genome referred to the bovine genome (0.398%) with a mean and median equal to 77.6 kb and 55.9 kb, respectively. A comparative analysis between the identified sheep CNVRs and those reported in the cattle and goat genomes indicated that overlaps between sheep and goat and sheep and cattle CNVRs are highly significant (P<0.0001) suggesting that several chromosome regions might contain recurrent interspecies CNVRs. Many sheep CNVs affect genes with important biological functions. Further studies are needed to evaluate the functional relevance of these CNVs.

2010-11-16 | GSE25122 | GEO

Analysis of copy number variations by SNP50 BeadChip array in Chinese sheep

Project description:The sheep (Ovis aries) plays a major socio-economic role in the world. Copy number variations (CNVs) are increasingly recognized as a key and potent source of genetic variation and phenotypic diversity, but little is known about the extent to which CNVs contribute to genetic variation in Chinese sheep breeds. Analyses of CNVs in the genomes of eight sheep breeds were performed using the sheep SNP50 BeadChip genotyping array. A total of 111 CNV regions (CNVRs) were obtained from 160 Chinese sheep breeds. These CNVRs covered 13.75 Mb of the sheep genome sequence. A total of 22 Go terms and 17 candidate genes were obtained from the functional analysis. Ten CNVRs were selected for validation, of which 7 CNVRs were further experimentally confirmed by quantitative PCR. Four candidate genes were selected to confirm the results of the functional analysis. These results provide a resource for furthering understanding of ruminant biology, and for further improving the genetic quality of sheep breeds.

2017-10-01 | GSE71584 | GEO

DCC_R27_WGS_Runs.3 - samples

Project description:Raw lane level fastq files from Whole genome sequencing in support of ICGC PRAD-CA Variant calls

| EGAD00001003957 | EGA

DCC_R27_WGS_Runs.1 - samples

Project description:Raw lane level fastq files from Whole genome sequencing in support of ICGC PRAD-CA Variant calls

| EGAD00001003909 | EGA