Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Nannocystis genomes

ABSTRACT: Genome sequences from Nannocystis spp. strains

PROVIDER: PRJEB23840 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR2215890_1.fastq.gz	Fastqsanger.gz
	ERR2215890_2.fastq.gz	Fastqsanger.gz
	ERR2215891_1.fastq.gz	Fastqsanger.gz
	ERR2215891_2.fastq.gz	Fastqsanger.gz
	ERR2215889_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

Nannocystis exedens

Project description:Nannocystis exedens overview

| PRJNA381236 | ENA

Nannocystis exedens strain:ATCC 25963

Project description:Nannocystis exedens strain:ATCC 25963 Genome sequencing

| PRJNA245574 | ENA

Nannocystis exedens strain:DSM 71

Project description:Nannocystis exedens strain:DSM 71 Genome sequencing and assembly

| PRJNA358186 | ENA

Nannocystis pusilla strain:DSM 53165 | isolate:not applicable

Project description:Nannocystis pusilla strain:DSM 53165 | isolate:not applicable Genome sequencing and assembly

| PRJNA758364 | ENA

Composition and organization of active centromere sequences in complex genomes

Project description:We report the sequences bound to CENP-A in the dog genome (Canis familiaris) for high-throughput characterization of centromeric sequences. We compare these ChIPSeq reads (72 bp, single read) against a reference centromeric satellite DNA domain database for the dog genome, resulting in the annotation of sequence variation and estimated abundance of seven satellite families together with adjacent, non-satellite sequences. To study global patterns of sequence diversity and characterizing the subset of sequences correlated with centromere function, these sequences were evaluated relative to a comprehensive centromere sequence domain k-mer library. From this analysis, we identify functional sequence features from two satellite families (CarSat1 and CarSat2) that are defined by distinct arrays subtypes. Sequences bound to CENP-A in MDCK (dog) cell line

2012-07-23 | E-GEOD-38079 | biostudies-arrayexpress

Composition and organization of active centromere sequences in complex genomes

2012-07-23 | GSE38079 | GEO

Comparative proteomics of Helicobacter pylori strains reveals geographical features rather than genomic variations

Project description:Helicobacter pylori, which is known as pathogens of various gastric diseases, have many types of genome sequence variants. That is part of the reason why pathogenesis and infection mechanisms of the H. pylori-driven gastric diseases have not been well clarified yet. Here we performed a large-scale proteome analysis to profile the heterogeneity of the proteome expression of 7 H. pylori strains by using LC/MS/MS-based proteomics approach combined with a customized database consisting of non-redundant tryptic peptide sequences derived from full genome sequences of 52 H. pylori strains. The non-redundant peptide database enabled us to identify more peptides in the database search of MS/MS data, compared with a simply merged protein database. Using the approach we performed proteome analysis of genome-unknown strains of H. pylori in as large-scale as genome-known ones. Clustering of the H. pylori strains using the proteome profiling slightly differed from the genome profiling and more clearly divided the strains into two groups based on the isolated area. Furthermore, we also identified phosphorylated proteins and sites of the H. pylori strains and obtained phosphorylation motif located in the N-terminus, which are commonly observed in bacteria.

2018-12-28 | PXD011364 | JPOST Repository

Genomes enophytes

Project description:Genome sequences endophytes from grapevine

| PRJEB8251 | ENA

Multiazole resistance in clinical and environmental fungal isolates

Project description:Whole genome sequencing of SYBARIS Aspergillus spp. known to be multi-drug resistant and difficult to treat. Aim of this experiment is to investigate the genetic basis of susceptibility to disease and elucidate molecular mechanisms of drug resistance in these strains.

2016-04-30 | E-SYBR-1 | biostudies-arrayexpress

Laboratory Mouse Genomes Strains WGS

Project description:Whole-genome sequencing on PacBio of laboratory mouse strains. See http://www.sanger.ac.uk/resources/mouse/genomes/ for more details. This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see http://www.sanger.ac.uk/datasharing/

2014-10-15 | E-ERAD-328 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data