Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Thermal stress of Benthic foraminifera microbiome.

ABSTRACT: Thermal stress of Benthic foraminifera microbiome.

PROVIDER: PRJEB23901 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR2219930_1.fastq.gz	Fastqsanger.gz
	ERR2219930_2.fastq.gz	Fastqsanger.gz
	ERR2219931_1.fastq.gz	Fastqsanger.gz
	ERR2219931_2.fastq.gz	Fastqsanger.gz
	ERR2219927_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 10

Similar Datasets

Microbiome in large benthic Foraminifera

Project description:Microbiome across depth in large benthic Foraminifera

| PRJEB24719 | ENA

Dual-compartment shotgun proteomics unravel thermal stress responses in reef-calcifiers and their photosymbionts

Project description:The proliferation of coral reef organisms, such as the key ecological engineers and carbonate producers’ large benthic foraminifera (LBF), greatly relies on the mutual association with photosymbiotic algae. With respect to global change impacts such as ocean warming, evaluating stress and acclimatization responses is highly important, but probing proteins and partitioning host and symbionts are major obstacles for studying LBF. We therefore applied a label-free quantitative proteomics approach to LBF holobionts in order to detect changes in the relative abundances of proteins in response to different thermal-stress scenarios. Subsequent identification allowed for the partial assignment of 1,618 proteins to either foraminiferal host or endosymbiotic diatoms. While single and episodic thermal-stress events only induced minor metabolic impacts, chronic thermal stress diminished photosynthesis-related proteins among the symbionts. Stress response and proteolysis-related proteins increased in abundance, illustrating the extent of damage. In contrast to the symbionts, host homeostasis was maintained through extensive repair mechanisms and high protein turnover. Metabolic pathways were adjusted to the symbiont loss by using alternative energy resources. However, linking proteome to physiological data revealed that resource redistribution impairs growth and certainly other functions that could disturb carbonate production. We show how compartment partitioning can give insights into interactions and stress response mechanisms in photosymbiotic reef-calcifiers.

2018-02-27 | PXD008015 | Pride

Coral thermal tolerance: tuning gene expression to resist thermal stress

2012-11-29 | GSE41435 | GEO

Coral thermal tolerance: tuning gene expression to resist thermal stress

Project description:Thermal history plays a role in the response of corals to subsequent heat stress. Prior heat stress can have a profound impact on later thermal tolerance, but the mechanism for this plasticity is not clear. The understanding of gene expression changes behind physiological acclimatization is critical in forecasts of coral health in impending climate change scenarios. Acropora millepora fragments were preconditioned to sublethal bleaching threshold stress for a period of 10 days; this prestress conferred bleaching resistance in subsequent thermal challenge, in which non-preconditioned coral bleached. Using microarrays, we analyze the transcriptomes of the coral host, comparing the bleaching-resistant preconditioned treatment to non-preconditioned and control treatments. This experiment compared host gene expression of Acropora millepora across control, non-preconditioned, and preconditioned treatments. Fragments were sampled prior to preconditioning (Day 4), following 10 days of thermal preconditioning (Day 20), and after two (Day 23), four (Day 25), and eight days (Day 29) of 31M-BM-0C thermal challenge. The analysis implements 45 arrays, representing 5 sampling points of three treatments (n=3).

2012-11-29 | E-GEOD-41435 | biostudies-arrayexpress

Foraminifera metagenome

Project description:Foraminifera metagenome

| PRJNA934687 | ENA

Foraminifera sp.

Project description:Foraminifera sp. overview

| PRJNA1059730 | ENA

Bunodosoma proteins thermal stress

Project description:Protein analysis of Bunodosoma sea anemone by thermal stress

| MSV000095911 | MassIVE

Arctic charr exposed to acute thermal stress

Project description:Arctic charr exposed to acute thermal stress

| PRJNA136745 | ENA

Beauveria bassiana multiprotein bridging factor 1 (BbMBF1) regulating genes involved in fungal response to the prolonged thermal stress

Project description:BbMBF1 played crucial roles in mediating response the prolonged thermal stress, a determinant to the environmental fitness of fungal entomopathogens. We characterized for the first time that disruption of BbMBF1 reduced the mycelial tolerance to the 9-h thermal stress under 40Â°C. The global transcriptome involved in the response to the thermal stress was analyzed by using high throughput sequencing (RNA-Seq). Our transcriptional profiles revealed that numerous differentially expressed genes (DEGs), of which involved in metabolism, cell transport and cell rescue, were significantly involved in fungal response to the themal stress. 1. Total RNA obtained from BbMBF1 disruption mutant were compared to that of wild type strain under control conditin (free of thermal stress); 2. Total RNA obtained from BbMBF1 disruption mutant were compared to that of WT strain under 9-h thermal stress at 40Â°C.

2015-11-01 | E-GEOD-52021 | biostudies-arrayexpress

Symbiodinium clade content drives host transcriptome more than thermal stress in the coral Montastraea faveolata

Project description:This SuperSeries is composed of the following subset Series: GSE12809: Symbiodinium clade content drives host transcriptome more than thermal stress in the coral Montastraea faveolata (part 1) GSE15253: Symbiodinium clade content drives host transcriptome more than thermal stress in the coral Montastraea faveolata (part 2) Refer to individual Series

2010-05-18 | E-GEOD-15262 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data