Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

The European Beech

ABSTRACT: The genome of the European Beech (Fagus sylvatica) shows no traces of horizontal gene transfer from fungi and provides a resource for future studies for a climate-change-adapted forestry in Europe

PROVIDER: PRJEB24056 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
		Other
	ERR2275110_1.fastq.gz	Fastqsanger.gz
	ERR2275110_2.fastq.gz	Fastqsanger.gz
	ERR2275103_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 18

Similar Datasets

Transcription profiling of mycorrhized European beech (Fagus sylvatica L.) roots in response to fertilization with different forms of inorganic nitrogen

Project description:Young Fagus sylvatica trees (approximately 7 to 8 years) were collected from a natural regeneration beech forest. The trees were excavated with intact soil cores, roots and top organic layer. The trees were then kept outdoors at the Department of Forest Botany, Georg-August-Universität Göttingen. Plants were protected from rain, and light conditions were matched to those of the natural stand using a shading net; otherwise, plants were exposed to natural climatic conditions. The soil moisture was regularly measured; plants were watered with deionized water as needed to keep soil moisture close to the original conditions. Trees was randomly relocated on a weekly basis throughout the experiment to avoid biasses caused by location or light effects. After 21 weeks, a treatment was applied to understand the physiological mechanisms of inorganic nitrogen uptake and assimilation under conditions of an inorganic nitrogen saturated forest simulation: Plants were fertilized with either a 20 mM solution of KNO3, a 20 mM solution of NH4Cl, or demineralized water (control) for 2 days. On the third day, the trees were harvested. Root tips were immediately shock-frozen in liquid nitrogen and used for RNA extraction.

2020-12-14 | E-MTAB-8931 | biostudies-arrayexpress

Fungal ITS1 of beech leaves (Fagus Sylvatica)

Project description:Fungal ITS1 of beech leaves (Fagus Sylvatica) Raw sequence reads

| PRJNA699462 | ENA

Microorganisms associated with beech (Fagus sylvatica) dieback

Project description:Microorganisms associated with beech (Fagus sylvatica) dieback Raw sequence reads

| PRJNA722031 | ENA

dhFagSylv

Project description:Fagus sylvatica (European beech)

| PRJEB76841 | ENA

Herbivore effect on beech pathogen

Project description:Effect of feeding damage by Orchestes fagi on infection of beech (Fagus sylvatica) leaves by Pseudodidymella fagi

| PRJEB27000 | ENA

Bacterial community composition in phyllosphere and rhizosphere of woolly beech aphid infestated beech

Project description:Bacterial community composition in the phyllosphere and rhizosphere of beech (Fagus sylvatica), subjected to woolly beech aphid (Phyllaphis fagi) infestation in a mesocosm experiment

| PRJEB46752 | ENA

dhFagSylv

Project description:Fagus sylvatica (European beech), genomic and transcriptomic data

| PRJEB76840 | ENA

Project description:cpDNA polymorphisms in European beech (Fagus sylvatica L)

| PRJNA498382 | ENA

Transcription profiling of mycorrhized European beech (Fagus sylvatica L.) roots in response to fertilization with different forms of inorganic nitrogen

Project description:Transcription profiling of mycorrhized European beech (Fagus sylvatica L.) roots in response to fertilization with different forms of inorganic nitrogen

| PRJEB37750 | ENA

Field transcriptome revealed a novel relationship between nitrate transport and flowering in Japanese beech

Project description:Recent advances in molecular and genetic studies about flowering time control have been increasingly available to elucidate the physiological mechanism underlying masting, the intermittent and synchronized production of a large amount of flowers and seeds in plant populations. To identify unexplored developmental and physiological processes associated with masting, genome-wide transcriptome analysis is a promising tool, but such analyses have yet to be performed. We established a field transcriptome using a typical masting species, Japanese beech (Fagus crenata Blume), over two years, and analyzed the data using a nonlinear time-series analysis called convergent cross mapping. Our field transcriptome was found to undergo numerous changes depending on the status of floral induction and season. An integrated approach of high-throughput transcriptomics and causal inference was successful at detecting novel causal regulatory relationships between nitrate transport and florigen synthesis/transport in a forest tree species. The synergistic activation of nitrate transport and floral transition could be adaptive to simultaneously satisfy floral transition at the appropriate timing and the nitrogen demand needed for flower formation.

2019-02-27 | GSE126540 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data