Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Metagenomic Shotgun of microorganisms cultivated with EPS

ABSTRACT: Metagenomic Shotgun of EPS-cultivated microorganisms

PROVIDER: PRJEB24069 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR2228770_1.fastq.gz	Fastqsanger.gz
	ERR2228770_2.fastq.gz	Fastqsanger.gz
	ERR2228771_1.fastq.gz	Fastqsanger.gz
	ERR2228771_2.fastq.gz	Fastqsanger.gz
	ERR2228772_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 16

Similar Datasets

HOME-BIO (sHOtgun MEtagenomic analysis of BIOlogical entities): from reads to pathogens. A specific and exhaustive pipeline for handling metagenomic shotgun sequencing data.

Project description:Next-Generation-Sequencing (NGS) technologies have led to important improvement in the detection of new or unrecognized infective agents, related to infectious diseases. In this context, NGS high-throughput technology can be used to achieve a comprehensive and unbiased sequencing of the nucleic acids present in a clinical sample (i.e. tissues). Metagenomic shotgun sequencing has emerged as powerful high-throughput approaches to analyze and survey microbial composition in the field of infectious diseases. By directly sequencing millions of nucleic acid molecules in a sample and matching the sequences to those available in databases, pathogens of an infectious disease can be inferred. Despite the large amount of metagenomic shotgun data produced, there is a lack of a comprehensive and easy-use pipeline for data analysis that avoid annoying and complicated bioinformatics steps. Here we present HOME-BIO, a modular and exhaustive pipeline for analysis of biological entity estimation, specific designed for shotgun sequenced clinical samples. HOME-BIO analysis provides comprehensive taxonomy classification by querying different source database and carry out main steps in metagenomic investigation. HOME-BIO is a powerful tool in the hand of biologist without computational experience, which are focused on metagenomic analysis. Its easy-to-use intrinsic characteristic allows users to simply import raw sequenced reads file and obtain taxonomy profile of their samples.

2021-07-26 | E-MTAB-9189 | biostudies-arrayexpress

HOME-BIO (sHOtgun MEtagenomic analysis of BIOlogical entities): from reads to pathogens. A specific and exhaustive pipeline for handling metagenomic shotgun sequencing data.

2021-07-26 | E-MTAB-9191 | biostudies-arrayexpress

H3Africa ReMAC Shotgun Metagenomic

Project description:Shotgun metagenomic sequencing data for nasopharyngeal colonization dynamics with Streptococcus pneumoniae and associated antimicrobial-resistance in a South African birth cohort.

| EGAD00001006244 | EGA

Acidobacterial EPS degraders uraveled by stable isotope probing - Shotgun

Project description:Acidobacterial EPS degraders uraveled by stable isotope probing - Shotgun Metagenomics sequencing

| PRJEB31257 | ENA

Shotgun metagenomic data from SeqOccIn project

Project description:Shotgun metagenomic data from mock communities and pig faeces samples

| PRJEB60080 | ENA

metagenomic Shotgun analysis of cecum microbiome of poultry

Project description:metagenomic Shotgun analysis of cecum microbiome of poultry

| PRJEB14491 | ENA

Transcriptome analyses of in vitro exercise by EPS and adrenaline

Project description:To evaluate transcriptomic changes induced by in vitro exercise, we established two in vitro exercise models; EPS (electrical pulse stimulation and clenbuterol treatment). As for clen-buterol treatment, differentiated C2C12 myotubes were treated by 30 ng/ml clenbuterol for 1 hour and control and clenbuterol treated C2C12 myotubes were analyzed by RNA-sequencing. As for an EPS model, EPS was applied to differentiated C2C12 myotubes for 24 hours and control and EPS applied C2C12 myotubes were analyzed by RNA-sequencing.

2021-11-06 | GSE183159 | GEO

Metagenomic shotgun sequencing of the Atlantic cod intestinal microbiome

Project description:Metagenomic shotgun sequencing of the Atlantic cod intestinal microbiome

| PRJEB29346 | ENA

Metagenomic shotgun sequencing of the Atlantic cod intestinal microbiome

Project description:Metagenomic shotgun sequencing of the Atlantic cod intestinal microbiome

| PRJEB29184 | ENA

Metagenomic sequencing of microorganisms in hospital sewage

Project description:Metagenomic sequencing of microorganisms in hospital sewage Genome sequencing and assembly

| PRJNA1159484 | ENA