Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Temporal shotgun metagenomics EC2015

ABSTRACT: Temporal shotgun metagenomic dissection of the coffee fermentation ecosystem

PROVIDER: PRJEB24129 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR2231570_1.fastq.gz	Fastqsanger.gz
	ERR2231570_2.fastq.gz	Fastqsanger.gz
	ERR2231571_1.fastq.gz	Fastqsanger.gz
	ERR2231571_2.fastq.gz	Fastqsanger.gz
	ERR2231572_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

shotgun metagenomics of wet coffee fermentation

Project description:shotgun metagenomics of wet coffee fermentation

| PRJEB31746 | ENA

lambic beer fermentation ecosystem

Project description:Temporal shotgun metagenomic dissection of the lambic beer fermentation ecosystem

| PRJEB28363 | ENA

Project description:EMG produced TPA metagenomics assembly of PRJEB24129 data set (Temporal shotgun metagenomic dissection of the coffee fermentation ecosystem).

| PRJEB51134 | ENA

HOME-BIO (sHOtgun MEtagenomic analysis of BIOlogical entities): from reads to pathogens. A specific and exhaustive pipeline for handling metagenomic shotgun sequencing data.

Project description:Next-Generation-Sequencing (NGS) technologies have led to important improvement in the detection of new or unrecognized infective agents, related to infectious diseases. In this context, NGS high-throughput technology can be used to achieve a comprehensive and unbiased sequencing of the nucleic acids present in a clinical sample (i.e. tissues). Metagenomic shotgun sequencing has emerged as powerful high-throughput approaches to analyze and survey microbial composition in the field of infectious diseases. By directly sequencing millions of nucleic acid molecules in a sample and matching the sequences to those available in databases, pathogens of an infectious disease can be inferred. Despite the large amount of metagenomic shotgun data produced, there is a lack of a comprehensive and easy-use pipeline for data analysis that avoid annoying and complicated bioinformatics steps. Here we present HOME-BIO, a modular and exhaustive pipeline for analysis of biological entity estimation, specific designed for shotgun sequenced clinical samples. HOME-BIO analysis provides comprehensive taxonomy classification by querying different source database and carry out main steps in metagenomic investigation. HOME-BIO is a powerful tool in the hand of biologist without computational experience, which are focused on metagenomic analysis. Its easy-to-use intrinsic characteristic allows users to simply import raw sequenced reads file and obtain taxonomy profile of their samples.

2021-07-26 | E-MTAB-9189 | biostudies-arrayexpress

HOME-BIO (sHOtgun MEtagenomic analysis of BIOlogical entities): from reads to pathogens. A specific and exhaustive pipeline for handling metagenomic shotgun sequencing data.

2021-07-26 | E-MTAB-9191 | biostudies-arrayexpress

Water kefir metagenomics

Project description:Taxonomic and functional analysis of a water kefir fermentation ecosystem through shotgun metagenomic sequencing

| PRJEB21603 | ENA

Bison fecal shotgun metagenomics

Project description:Bison fecal shotgun metagenomics Raw sequence reads

| PRJNA1069976 | ENA

H3Africa ReMAC Shotgun Metagenomic

Project description:Shotgun metagenomic sequencing data for nasopharyngeal colonization dynamics with Streptococcus pneumoniae and associated antimicrobial-resistance in a South African birth cohort.

| EGAD00001006244 | EGA

Shotgun metagenomics Sorghum rhizosphere

Project description:Shotgun metagenomics Sorghum rhizosphere with the addition of inoculants

| PRJEB36816 | ENA

DIRECT PLUS Shotgun Metagenomics data

Project description:DIRECT PLUS 6-month Shotgun Metagenomics data

| PRJEB49147 | ENA