Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Phytophthora nicotianae in pineapple in the Canary Islands

ABSTRACT: Detection of Phytophthora nicotianae and Geotrichum sp. associates to heart rot in pineapple in the Canary Islands, Spain.

PROVIDER: PRJEB25150 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Andropogon abyssinicus in the Canary Islands

Project description:Andropogon abyssinicus (Andropogoneae, Panicoideae, Poaceae), naturalized in La Palma (Canary Islands, Spain)

| PRJEB73329 | ENA

DNA methylome of pineapple

Project description:Bisulfite treatment libraries were made to characterize the DNA methylome of pineapple

2018-09-27 | GSE120401 | GEO

Proteogenomics Pipeline For Pineapple

Project description:Here we have undertaken a pilot study analysing the proteome of MD2 pineapple using Liquid Chromatography coupled with Mass Spectrometry (LC-MS/MS) and identified 3,818 peptides from 1,781 candidate proteins in the annotated V3 genome sequenced. In addition, a further 603 peptide identifications were found that mapped exclusively to an independent MD2 transcriptome-derived database and were not found in the standard V3 annotated proteome. Peptide identifications derived from the MD2 transcripts were also cross-referenced to a more recent and complete MD2 genome annotation, resulting in 402 non overlapping peptides with either of the genomes. Subsequently, cross-referencing these peptide identifications via their parent transcripts, 30 high-quality gene candidates novel to the V3 pineapple genomes were identified. These analyses add to the knowledge of experimentally validated pineapple genes and demonstrate the utility of transcript-derived proteomics to discover both novel genes and genetic structure in plant genome, and can help improve its annotation.

2024-05-24 | PXD045998 | Pride

Glutamicibacter nicotianae

Project description:Glutamicibacter nicotianae overview

| PRJNA490778 | ENA

Phytophthora nicotianae

Project description:Phytophthora nicotianae overview

| PRJNA401048 | ENA

RNAseq reveals differential gene expression contributing to Phytophthora nicotianae adaptation to partial resistance in tobacco

Project description:RNAseq was performed on two isolates of P. nicotianae (adapted to either the susceptible tobacco genotype Hicks or the partially resistant genotype K 326 Wz/Wz) to identify differentially expressed genes (DEGs) during their pathogenic interactions with K 326 Wz/Wz and Hicks.

2022-03-09 | GSE168516 | GEO

Canary genome

Project description:Genome sequence of the canary (Serinus canaria)

| PRJEB1766 | ENA

Microarray analysis of gene expression changes during non-climacteric pineapple fruit ripening

Project description:Pineapple is a non climacteric fruit. This study investigates changes in gene expression between the mature green fruit and mature yellow fruit ripening stages

2012-11-30 | GSE38521 | GEO

Phytophthora nicotianae

Project description:Phytophthora nicotianae Raw sequence reads

| PRJNA755634 | ENA

Phytophthora nicotianae

Project description:Phytophthora nicotianae Raw sequence reads

| PRJNA913648 | ENA