Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

University of Edinburgh, Scotland

ABSTRACT: Teladorsagia circumcincta transcriptome sequencing study, using Roche 454-Titanium

PROVIDER: PRJEB2633 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR039830.fastq.gz	Fastqsanger.gz
	ERR039831.fastq.gz	Fastqsanger.gz
	ERR039832.fastq.gz	Fastqsanger.gz

Items per page:

1 - 3 of 3

Similar Datasets

University of Edinburgh, Scotland

Project description:Schizosaccharomyces japonicus genome study

| PRJEB2391 | ENA

Project description:Sparus aurata (Gilthead seabream) transcriptome sequencing study, using Roche 454-Titanium

| PRJEB2658 | ENA

Teladorsagia circumcincta

Project description:Teladorsagia circumcincta overview

| PRJNA72693 | ENA

Project description:Transcriptome sequencing of Three Begonia species, using Roche 454 Titanium pyrosequencing.

| PRJEB2868 | ENA

High-throughput 16S rRNA amplicon pyrosequencing of contaminated aquifer sediment

Project description:Contaminated aquifer (Dusseldorf-Flinger, Germany) templates extracted from 5 sediment depths ranging between 6.4 and 8.4 m below ground and over 3 years of sampling were amplified for amplicon pyrosequencing using the primers Ba27f (5’-aga gtt tga tcm tgg ctc ag-3’) and Ba519r (5’- tat tac cgc ggc kgc tg-3’), extended as amplicon fusion primers with respective primer A or B adapters, key sequence and multiplex identifiers (MID) as recommended by 454/Roche. Amplicons were purified and pooled as specified by the manufacturer. Emulsion PCR (emPCR), purification of DNA-enriched beads and sequencing run were performed following protocols and using a 2nd generation pyrosequencer (454 GS FLX Titanium, Roche) as recommended by the developer. Quality filtering of the pyrosequencing reads was performed using the automatic amplicon pipeline of the GS Run Processor (Roche), with a slight modification concerning the valley filter (vfScanAllFlows false instead of TiOnly) to extract the sequences. Demultiplexed raw reads were furhter trimmed for quality and lenght (>250 bp).

2012-11-11 | GSE25345 | GEO

pamknight ovine abomasum1

Project description:To address the protective mechanisms generated in animals on previous exposure to this parasite, using samples of abomasal mucosa collected pre- and post- challenge from animals of differing immune status in an experimental model of Teladorsagia circumcincta infection.

2011-05-20 | E-TABM-1149 | biostudies-arrayexpress

Project description:Bombus terrestris (Buff-tailed or Large earth bumblebee) transcriptome sequencing study, using Roche 454-Titanium

| PRJEB2699 | ENA

Teladorsagia circumcincta strain:S

Project description:Teladorsagia circumcincta Genome Sequencing

| PRJNA72569 | ENA

Teladorsagia circumcincta isolate:MTci-2_CVL

Project description:Teladorsagia circumcincta niche specific expression

| PRJNA360903 | ENA

Teladorsagia circumcincta transcriptomics

Project description:This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see http://www.sanger.ac.uk/datasharing/ Teladorsagia circumcincta, the brown stomach worm, is the most important gastro-intestinal parasite of sheep in temperate regions and is present on 100% of sheep farms in the UK. Infection with T. circumcincta causes a spectrum of disease in the host, ranging from weight loss to death, and results in significant production losses. Parasitic disease is currently controlled by treatment with anthelmintics but resistance to these drugs is widespread and threatens the viability of the livestock industry. There are now well-documented cases of UK farms harbouring triple-resistant T. circumcincta, which can no longer be controlled by any of the three major anthelmintic classes, forcing farmers to abandon sheep rearing. High-throughput sequencing of life stages of T. circumcincta will be used for gene finding and transcriptome analysis.

2015-06-30 | E-ERAD-342 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data