Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Metagenomes of different algae species

ABSTRACT: Metagenomes of different algae species

PROVIDER: PRJEB26344 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR2729791_1.fastq.gz	Fastqsanger.gz
	ERR2729791_2.fastq.gz	Fastqsanger.gz
	ERR2729792_1.fastq.gz	Fastqsanger.gz
	ERR2729792_2.fastq.gz	Fastqsanger.gz
	ERR2729793_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 8

Similar Datasets

Genomic Bins of different algae metagenomes

Project description:Genomic Bins of different algae metagenomes

| PRJEB26345 | ENA

Metabolomics profile of algae species extracts

Project description:Non-targeted metabolomics analysis of secondary metabolites extracted by different algae species from the North Atlantic ocean

2023-03-28 | MSV000091568 | MassIVE

GNPS - Metabolomics profile of algae species extracts

Project description:Non-targeted metabolomics analysis of secondary metabolites extracted by different algae species from the North Atlantic ocean

2023-03-28 | MSV000091568 | GNPS

Transcriptomic responses of coralline algae

Project description:Crustose coralline algae (CCA) are calcifying red macroalgae that play important ecological roles including stabilisation of reef frameworks and provision of settlement cues for a range of marine invertebrates. Previous research into the responses of CCA to ocean warming (OW) and ocean acidification (OA) have found magnitude of effect to be species-specific. Response to OW and OA could be linked to divergent underlying molecular processes across species. Here we show Sporolithon durum, a species that exhibits low sensitivity to climate stressors, had little change in metabolic performance and did not significantly alter the expression of any genes when exposed to temperature and pH perturbations. In contrast, Porolithon onkodes, a major coral reef builder, reduced photosynthetic rates and had a labile transcriptomic response with over 400 significantly differentially expressed genes, with differential regulation of genes relating to physiological processes such as carbon acquisition and metabolism. The differential gene expression detected in P. onkodes implicates possible key metabolic pathways, including the pentose phosphate pathway, in the stress response of this species. We suggest S. durum is more resistant to OW and OA than P. onkodes, which demonstrated a high sensitivity to climate stressors and may have limited ability for acclimatisation. Understanding changes in gene expression in relation to physiological processes of CCA could help us understand and predict how different species will respond to, and persist in, future ocean conditions predicted for 2100.

2022-08-26 | GSE211882 | GEO

GNPS - LC-MS/MS analysis of PPL SPE DOM extracts from different algae species from the Gulf of Maine

Project description:NT LC-MS/MS analysis of PPL SPE DOM extracts from different algae species from the Gulf of Maine and sea water samples

2024-03-16 | MSV000094338 | GNPS

Freshwater metagenomes from different European and Asian lakes

Project description:Freshwater metagenomes from different European and Asian lakes

| PRJEB35640 | ENA

The transcriptome of Tetraselmis suecica reveals new insights on green algae response to nitrogen starvation

Project description:Nitrogen starvation is an efficient environmental pressure used to increase lipid accumulation and oil droplet formation in microalgal cells. Various studies focused on metabolic changes occurring in microalgae in nitrogen starvation conditions, but the mechanisms at the basis of these changes are not completely understood. Between microalgae, green algae, with more than 7000 species growing in a variety of habitats, have been frequently studied for energy purposes, but also as source of bioactive extracts/compounds. In this study, de novo transcriptome of the green algae Tetraselmis suecica has been performed in order to (1) deeply study its response to nitrogen starvation, (2) to look for enzymes with antioxidant capacity and for polyketide synthases (PKSs), (3) if present, to evaluate if nutrient starvation can influence their expression levels.

2018-12-01 | GSE109461 | GEO

Total RNA from different species fly heads

Project description:Total RNA seq from different species fly heads at different temperatures

2019-12-03 | GSE124142 | GEO

algae

Project description:algae Genome sequencing

| PRJNA1138973 | ENA

algae

Project description:algae Genome sequencing

| PRJNA1139063 | ENA