Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Bacterial and Fungal diversity during retting

ABSTRACT: Multimodal assessment of flax dew-retting and functional impact on short fiber polymer composites

PROVIDER: PRJEB27872 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR2757320_1.fastq.gz	Fastqsanger.gz
	ERR2757320_2.fastq.gz	Fastqsanger.gz
	ERR2757330_1.fastq.gz	Fastqsanger.gz
	ERR2757330_2.fastq.gz	Fastqsanger.gz
	ERR2757321_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 36

Similar Datasets

Project description:Flax dew retting

| PRJNA910643 | ENA

Microbial diversity during flax dew retting

Project description:Characterization of bacterial and fungal community dynamics by high-throughput sequencing (HTS) metabarcoding during flax dew-retting

| PRJEB20299 | ENA

water retting

Project description:water retting Targeted loci

| PRJNA1124099 | ENA

Identification of new potential molecular actors related to fiber quality in flax through Omics

Project description:One of the biggest challenges to a more widespread utilization of natural fibers from flax and other fiber plants is to obtain a better understanding of the different factors underlying the observed variability in fiber quality. To do this, we measured fiber morphometric parameters from seven different flax varieties (4 spring fiber, 2 winter fiber and 1 winter oil) and undertook Partial Least-Squares Discriminant Analysis (sPLS-DA) of transcriptomic data obtained from the same varieties in an attempt to identify high-information molecular markers. The calculation of Pearson correlation coefficients identified 5 putative gene-markers strongly correlated with morphometric features. Proteomic analysis on the two varieties showing the most discriminant and significant differences regarding to morphometrics identified an additional 4 protein-markers. The majority of the obtained markers are involved in lipid metabolism and the senescence process. Further comparative analysis of the obtained expression data with fiber mechanical measurements (strength, maximum force, area) obtained after field-retting for all 7 varieties allowed us to identify 4 highly-correlated putative molecular markers for the mechanical parameters. Three genes, connected directly or indirectly to cell wall metabolism (Expansin-related protein 3 precursor, beta-glucosidase and ascorbate peroxidase), and one gene coding an enzyme that catalyzes the oxidative decarboxylation of L-malate (NADP-malic enzyme 3). Based on our results, we hypothesize that a reduced number of RNA and protein functional markers can be used to more accurately monitor and/or predict fiber yield and quality properties in different flax varieties, thereby contributing to an Agriculture 4.0 for this economically-important species.

2023-07-18 | PXD039389 | Pride

Jute Retting Water

Project description:Jute Retting Water Metagenome

| PRJNA768943 | ENA

Hemp water retting

Project description:Hemp water retting Targeted loci

| PRJNA1160266 | ENA

biofilm metagenome

Project description:Microbial dark matter driven degradation of carbon fiber polymer composites

| PRJNA615962 | ENA

Investigation of the bacterial retting community and Proteome profile in the degumming process of kenaf bast based on metagenomic and proteomics

Project description:We collected retting liquids at 0 days, 10 days and 34 days of for analysis. We evaluated the yields and quality of kenaf fiber at different retting times. And the proteomic analysis was performed using LC–MS/MS technology.

2022-01-11 | PXD030876 |

Investigation of the bacterial retting community and Proteome profile in the degumming process of kenaf bast based on metagenomic and proteomics

2022-07-03 | PXD035056 | JPOST Repository

aquatic metagenome

Project description:flax-retting water Raw sequence reads

| PRJNA309354 | ENA