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Explaining niche separation in tropical forests: feedbacks between root-fungal symbioses and soil phosphorus partitioning

ABSTRACT: The project will provide mechanistic insight into the maintenance of hyper-diverse plant communities and make a step-change in our understanding of the role of soil biodiversity in niche separation within tropical tree communities. It targets NERC priority areas in biodiversity, and will aid stakeholders who are charged with managing plant and soil biodiversity and the goods and services provided by tropical ecosystems.

PROVIDER: PRJEB28494 | ENA |

REPOSITORIES: ENA

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Explaining niche separation in tropical forests: feedbacks between root-fungal symbioses and soil phosphorus partitioning

Project description:Explaining niche separation in tropical forests: feedbacks between root-fungal symbioses and soil phosphorus partitioning

| PRJEB28496 | ENA

Plant-soil feedbacks in a grassland

Project description:Plant-soil feedbacks in a grassland

| PRJEB31856 | ENA

Microarray transcriptome analysis of soybean genes induced during rhizobial, arbuscular mycorrhizal and their dual symbioses

Project description:For identification of plant gene networks which interact to initiate and support both rhizobial nodulation and AM fungal colonization, the transcription profiles of soybean genes induced during rhizobial, AM and their dual symbioses.

2017-10-01 | GSE89019 | GEO

Chemocoding as an identification tool where morphological- and DNA-based methods fall short: Inga as a case study

Project description:The need for species identification and taxonomic discovery has led to the development of innovative technologies for large-scale plant identification. DNA barcoding has been useful, but fails to distinguish among many species in species-rich plant genera, particularly in tropical regions. Here, we show that chemical fingerprinting, or “chemocoding”, has great potential for plant identification in challenging tropical biomes. Using untargeted metabolomics in combination with multivariate analysis, we constructed species-level fingerprints, which we define as chemocoding. We evaluated the utility of chemocoding with species that were defined morphologically and subject to next-generation DNA sequencing in the diverse and recently radiated neotropical genus, Inga (Leguminosae), both at single study sites and across broad geographic scales. Our results show that chemocoding is a robust method for distinguishing morphologically similar species at a single site and for identifying widespread species across continental-scale ranges. Given that species are the fundamental unit of analysis for conservation and biodiversity research, the development of accurate identification methods is essential. We suggest that chemocoding will be a valuable additional source of data for a quick identification of plants, especially for groups where other methods fall short.

2018-01-22 | MTBLS574 | MetaboLights

Arbuscular mycorrhizal symbioses

Project description:This SuperSeries is composed of the SubSeries listed below.

2007-03-08 | GSE5477 | GEO

Project description:Exploiting biodiversity in Urochloa (Brachiaria) tropical forage grasses

| PRJNA771228 | ENA

Project description:Exploiting biodiversity in Brachiaria/Panicum tropical forage grasses

| PRJNA513453 | ENA

A soybean pattern recognition receptor conferring broad-spectrum pathogen and pest resistance regulates expression of several NLR receptor proteins

Project description:Understanding the molecular response of plants to innumerable pathogens and pests is crucial in managing and eradicating plant diseases. We investigated the transcriptomic depiction of GmDR1 transgenic lines vs. their genitor Williams 82 treated with the PAMP chitin to critical gene expression changes that might lead to the defense responses manifested by the GmDR1 transgenic plants

2023-02-28 | GSE226254 | GEO

Project description:Environmental DNA detection of plant biodiversity

| PRJNA605442 | ENA

An evolutionary epigenetic clock in plants [Biostress]

Project description:Molecular clocks are the basis for dating the divergence between lineages over macro-evolutionary timescales (~104-108 years). However, classical DNA-based clocks tick too slowly to inform us about the recent past. Here, we demonstrate that stochastic DNA methylation changes at a subset of cytosines in plant genomes possess a clock-like behavior. This ‘epimutation-clock’ is orders of magnitude faster than DNA-based clocks and enables phylogenetic explorations on a scale of years to centuries. We show experimentally that epimutation-clocks recapitulate known topologies and branching times of intra-species phylogenetic trees in the selfing plant A. thaliana and the clonal seagrass Z. marina, which represent the two primary modes of plant reproduction. This discovery will open new possibilities for high-resolution temporal studies of plant biodiversity.

2024-01-11 | GSE223861 | GEO

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