Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

RNA-seq from red raspberry (Rubus idaeus)

ABSTRACT: RNA-seq analysis of red raspberry plants (Rubus idaeus) (variety Glen Dee) with virus like symptoms

PROVIDER: PRJEB28528 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR2784286_1.fastq.gz	Fastqsanger.gz
	ERR2784286_2.fastq.gz	Fastqsanger.gz
	ERR2784287_1.fastq.gz	Fastqsanger.gz
	ERR2784287_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

Rubus idaeus cultivar:DNS-1

Project description:red raspberry(Rubus idaeus L.) transcriptome

| PRJNA549119 | ENA

Transcription profiling of raspberry buds in a time series during dormancy release

Project description:Co-ordinated gene expression during phases of dormancy release in raspberry (Rubus idaeus L.) buds

2007-02-02 | E-MEXP-825 | biostudies-arrayexpress

Combining QTL mapping and gene expression analysis to elucidate the genetic control of ‘crumbly’ fruit in red raspberry

Project description:‘Crumbly’ fruit is a developmental disorder in red raspberry (Rubus idaeus) that results in malformed fruit with poor adherence of drupelets to one another. In terms of quality and yield, crumbly fruit has become a serious problem in the raspberry industry resulting in unsaleable fruit and waste. A microarray experiment, using pools of progeny from a segregating mapping population (Glen Moy x Latham) with either 'normal' or 'crumbly' fruit at three different fruit developmental stages ('closed'; 'open'; 'green'), identified several genes that were differentially expressed between the crumbly and non-crumbly phenotypes within three quantitative trait loci (QTL) identified. Analysis of gene function highlighted the importance of processes that compromise ovule fertilization as triggers of the crumbly fruit phenotype.

2021-04-16 | E-MTAB-10049 | biostudies-arrayexpress

Genotyping-by-sequencing in red raspberry

Project description:Genotyping-by-sequencing in red raspberry (Rubus idaeus)

| PRJEB23168 | ENA

Rubus idaeus

Project description:Rubus idaeus Map

| PRJNA163527 | ENA

Rubus idaeus

Project description:Rubus idaeus Map

| PRJNA163529 | ENA

Rubus idaeus

Project description:Rubus idaeus Organism overview