Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Carnoulès Metagenome 8 Metagenomic/Metatranscriptomic Assembly

ABSTRACT: Assembly of CARN8, a metagenome from Carnoulès acid mine drainage metagenomic and metatranscriptomic data.

PROVIDER: PRJEB28721 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Carnoulès AMD comparative metatranscriptomics study - 2018

Project description:Comparative analysis of metatranscriptomic data from 3 sampling stations in the Carnoulès Acid Mine Drainage (AMD)

| PRJEB38318 | ENA

Candidatus Gallionella acididurans isolate:ShG14-8

Project description:acid mine drainage Metagenomic assembly

| PRJNA309053 | ENA

Metagenomic and metatranscriptomic data from a growth chamber mesocosm

Project description:Metagenomic and metatranscriptomic data from a growth chamber mesocosm

| PRJNA930014 | ENA

metagenomic and metatranscriptomic data of fecal mini-bioreactor samples

Project description:Metagenomic and metatranscriptomic data of fecal mini-bioreactor samples Raw sequence reads

| PRJNA949391 | ENA

Project description:Acid Mine Drainage

| PRJNA831554 | ENA

Acid Mine Drainage

Project description:Acid Mine Drainage

| PRJNA745541 | ENA

Fungi contribute critical but spatially varying roles in nitrogen and carbon cycling in acidic environments

Project description:Proteins from acid mine drainage microbial communities were extracted, trypsine digested and identified with LC-MS/MS analysis.

2016-03-15 | PXD003541 | Pride

Metagenomic/Metatranscriptomic Sequencing of Pulmonary Fluid in Immunocompromised Children

Project description:Metagenomic/Metatranscriptomic Sequencing of Pulmonary Fluid in Immunocompromised Children

| PRJNA489750 | ENA

Metagenomic/Metatranscriptomic Sequencing of Pulmonary Fluid in Immunocompromised Children

Project description:Metagenomic/Metatranscriptomic Sequencing of Pulmonary Fluid in Immunocompromised Children

| PRJNA489751 | ENA

HOME-BIO (sHOtgun MEtagenomic analysis of BIOlogical entities): from reads to pathogens. A specific and exhaustive pipeline for handling metagenomic shotgun sequencing data.

Project description:Next-Generation-Sequencing (NGS) technologies have led to important improvement in the detection of new or unrecognized infective agents, related to infectious diseases. In this context, NGS high-throughput technology can be used to achieve a comprehensive and unbiased sequencing of the nucleic acids present in a clinical sample (i.e. tissues). Metagenomic shotgun sequencing has emerged as powerful high-throughput approaches to analyze and survey microbial composition in the field of infectious diseases. By directly sequencing millions of nucleic acid molecules in a sample and matching the sequences to those available in databases, pathogens of an infectious disease can be inferred. Despite the large amount of metagenomic shotgun data produced, there is a lack of a comprehensive and easy-use pipeline for data analysis that avoid annoying and complicated bioinformatics steps. Here we present HOME-BIO, a modular and exhaustive pipeline for analysis of biological entity estimation, specific designed for shotgun sequenced clinical samples. HOME-BIO analysis provides comprehensive taxonomy classification by querying different source database and carry out main steps in metagenomic investigation. HOME-BIO is a powerful tool in the hand of biologist without computational experience, which are focused on metagenomic analysis. Its easy-to-use intrinsic characteristic allows users to simply import raw sequenced reads file and obtain taxonomy profile of their samples.

2021-07-26 | E-MTAB-9189 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data