Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

First complete genome sequences of Zika virus from Midwest Brazil, 2015.

ABSTRACT: Zika genome from Sinop

PROVIDER: PRJEB30828 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR3063855_1.fastq.gz	Fastqsanger.gz
	ERR3063855_2.fastq.gz	Fastqsanger.gz
	ERR3063856_1.fastq.gz	Fastqsanger.gz
	ERR3063856_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

Binding of the Zika virus genome to endogenous human transcripts

Project description:This study aims to study binding events between the Zika virus RNA genome and endogenous transcripts during infection of a human cell line. We develop a novel psolaren-based cross-linking technique to preserve interactions between mRNA and the Zika genome. Interacting RNA molecules are ligated together prior to reversal of the cross-links and selection for Zika-containing fragments. Reverse transcription and paired-end high-throughput sequencing then allow us to identify the interacting transcripts. We generated three batches of libraries, where all samples in each batch were generated from the same pool of RNA. Within each batch, we have the livefire sample, where the protocol was performed as described above; a reverse-control sample, where the protocol was performed by reversing the cross-links prior to ligation; and a no-cross-link control, where the protocol was performed without any cross-linking. The latter two samples represent negative controls where no genuine interactions should be observed.

2018-07-13 | E-MTAB-6427 | biostudies-arrayexpress

Complete Genome Sequences of Five Zika Virus Isolates.

Project description:Zika virus is an emerging human pathogen of great concern due to putative links to microcephaly and Guillain-Barre syndrome. Here, we report the complete genomes, including the 5' and 3' untranslated regions, of five Zika virus isolates, one from the Asian lineage and four from the African lineage.

| S-EPMC4866861 | biostudies-literature

First Complete Genome Sequences of Zika Virus Isolated from Febrile Patient Sera in Ecuador.

Project description:Here, we present the complete genome sequences of two Zika virus (ZIKV) strains, EcEs062_16 and EcEs089_16, isolated from the sera of febrile patients in Esmeraldas City, in the northern coastal province of Esmeraldas, Ecuador, in April 2016. These are the first complete ZIKV genomes to be reported from Ecuador.

| S-EPMC5323627 | biostudies-literature

First Complete Genome Sequence of Zika Virus (Flaviviridae, Flavivirus) from an Autochthonous Transmission in Brazil.

Project description:We report here the genome sequence of Zika virus, strain ZikaSPH2015, containing all structural and nonstructural proteins flanked by the 5' and 3' untranslated region. It was isolated in São Paulo state, Brazil, in 2015, from a patient who received a blood transfusion from an asymptomatic donor at the time of donation.

| S-EPMC4777745 | biostudies-literature

Zika genome

Project description:Zika genome

| PRJEB34688 | ENA

Zika virus

Project description:Zika virus Genome sequencing

| PRJNA344504 | ENA

Zika virus

Project description:Zika virus Genome sequencing

| PRJNA315525 | ENA

Zika virus

Project description:Zika Virus Virus genome sequencing