Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Yucra Metagenome Project

ABSTRACT: Yucra orchard metagenome

PROVIDER: PRJEB30888 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR3085921_1.fastq.gz	Fastqsanger.gz
	ERR3085921_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Severino Metagenome Project

Project description:Severino orchard metagenome

| PRJEB30896 | ENA

BeerDeCoded: the open beer metagenome project.

Project description:Next generation sequencing has radically changed research in the life sciences, in both academic and corporate laboratories. The potential impact is tremendous, yet a majority of citizens have little or no understanding of the technological and ethical aspects of this widespread adoption. We designed BeerDeCoded as a pretext to discuss the societal issues related to genomic and metagenomic data with fellow citizens, while advancing scientific knowledge of the most popular beverage of all. In the spirit of citizen science, sample collection and DNA extraction were carried out with the participation of non-scientists in the community laboratory of Hackuarium, a not-for-profit organisation that supports unconventional research and promotes the public understanding of science. The dataset presented herein contains the targeted metagenomic profile of 39 bottled beers from 5 countries, based on internal transcribed spacer (ITS) sequencing of fungal species. A preliminary analysis reveals the presence of a large diversity of wild yeast species in commercial brews. With this project, we demonstrate that coupling simple laboratory procedures that can be carried out in a non-professional environment with state-of-the-art sequencing technologies and targeted metagenomic analyses, can lead to the detection and identification of the microbial content in bottled beer.

| S-EPMC5657021 | biostudies-literature

rhizosphere metagenome

Project description:Mandarin orange orchard soil Metagenome

| PRJNA273179 | ENA

Metagenome of mango orchard soil

Project description:Metagenome of mango orchard soil Metagenome

| PRJNA592608 | ENA

Diamante Metagenome Project

Project description:Diamante Lake Metagenome

| PRJEB31029 | ENA

Carnoulès Metagenome Project

Project description:Carnoulès Metagenome Project

| PRJNA62261 | ENA

Defining the Secrebiome: the expressed secretome of the gut microbiome and its role in obese Mexican children

Project description:high throughput sequencing of the metagenome of mexican children

2020-03-16 | GSE143207 | GEO

soil metagenome

Project description:Metagenome isolated from soil in an apple orchard in Wisconsin

| PRJNA36531 | ENA

The YNP Metagenome Project: Environmental Parameters Responsible for Microbial Distribution in the Yellowstone Geothermal Ecosystem.

Project description:The Yellowstone geothermal complex contains over 10,000 diverse geothermal features that host numerous phylogenetically deeply rooted and poorly understood archaea, bacteria, and viruses. Microbial communities in high-temperature environments are generally less diverse than soil, marine, sediment, or lake habitats and therefore offer a tremendous opportunity for studying the structure and function of different model microbial communities using environmental metagenomics. One of the broader goals of this study was to establish linkages among microbial distribution, metabolic potential, and environmental variables. Twenty geochemically distinct geothermal ecosystems representing a broad spectrum of Yellowstone hot-spring environments were used for metagenomic and geochemical analysis and included approximately equal numbers of: (1) phototrophic mats, (2) "filamentous streamer" communities, and (3) archaeal-dominated sediments. The metagenomes were analyzed using a suite of complementary and integrative bioinformatic tools, including phylogenetic and functional analysis of both individual sequence reads and assemblies of predominant phylotypes. This volume identifies major environmental determinants of a large number of thermophilic microbial lineages, many of which have not been fully described in the literature nor previously cultivated to enable functional and genomic analyses. Moreover, protein family abundance comparisons and in-depth analyses of specific genes and metabolic pathways relevant to these hot-spring environments reveal hallmark signatures of metabolic capabilities that parallel the distribution of phylotypes across specific types of geochemical environments.

| S-EPMC3644721 | biostudies-literature

plant metagenome

Project description:microbiota of apple orchard

| PRJDB12061 | ENA