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Transcriptome sequencing of Festulolium accessions under salt stress

ABSTRACT: Transcriptome sequencing of Festulolium accessions under salt stress

PROVIDER: PRJEB31372 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	ERR3170350_1.fastq.gz	Fastqsanger.gz
	ERR3170350_2.fastq.gz	Fastqsanger.gz
	ERR3170351_1.fastq.gz	Fastqsanger.gz
	ERR3170351_2.fastq.gz	Fastqsanger.gz
	ERR3170352_1.fastq.gz	Fastqsanger.gz

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Transcriptome sequencing of Festulolium accessions under salt stress

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Transcriptome sequencing of Festulolium accessions under salt stress.

Project description:ObjectivesThe objective of this study was to establish transcriptome assemblies of Festulolium hybrids under salt stress, and identify genes regulated across the hybrids in response to salt stress. The development of transcriptome assemblies for Festulolium hybrids and cataloguing of genes regulated under salt stress will facilitate further downstream studies.ResultsPlants were grown at three salt concentrations (0.5%, 1% and 1.5%) and phenotypic and transcriptomic data was collected. Salt stress was confirmed by progressive loss of green leaves as salt concentration increased from 0 to 1.5%. We generated de-novo transcriptome assemblies for two Festulolium pabulare festucoid genotypes, for a single Festulolium braunii genotype, and a single F. pabulare loloid genotype. We also identified 1555 transcripts that were up regulated and 1264 transcripts that were down regulated in response to salt stress in the Festulolium hybrids. Some of the identified transcripts showed significant sequence similarity with genes known to be regulated during salt and other abiotic stresses.

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