Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Diversity of lactococcal 936 phages by amplicon sequencing of the portal protein

ABSTRACT: Diversity of lactococcal 936 phages by amplicon sequencing of the portal protein

PROVIDER: PRJEB32164 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Unprecedented Diversity of Lactococcal Group 936 Bacteriophages Revealed by Amplicon Sequencing of the Portal Protein Gene.

Project description:Lactococcus lactis is one of the most important bacteria in dairy fermentations, being used in the production of cheese and buttermilk. The processes are vulnerable to phage attacks, and undefined mixtures of lactococcal strains are often used to reduce the risk of bacteriophage caused fermentation failure. Other preventive measures include culture rotation to prevent phage build-up and phage monitoring. Phage diversity, rather than quantity, is the largest threat to fermentations using undefined mixed starter cultures. We have developed a method for culture independent diversity analysis of lytic bacteriophages of the 936 group, the phages most commonly found in dairies. Using, as a target, a highly variable region of the portal protein gene, we demonstrate an unprecedented diversity and the presence of new 936 phages in samples taken from cheese production. The method should be useful to the dairy industry and starter culture manufacturers in their efforts to reduce phage problems.

| S-EPMC6563314 | biostudies-literature

Lactococcus phage 936

Project description:Lactococcus phage 936 sensu lato overview

| PRJNA69559 | ENA

Phages DT1 and 2972 gene expression study

Project description:This series represents the gene expression study of phages DT1 and 2972 during the whole process of infection. Gene expression was measured at nine time intervals (0, 2, 7, 12, 17, 22, 27, 32, 37 minutes) during phage infection.

2005-08-10 | E-GEOD-2476 | biostudies-arrayexpress

Thlaspi arvense cultivar:2020-M2-936

Project description:Thlaspi arvense 2020-M2-936 Resequencing

| PRJNA1239758 | ENA

Salmonella phages

Project description:Salmonella phages

| PRJEB31250 | ENA

Butyrivibrio phages

Project description:Butyrivibrio Phages

| PRJNA613207 | ENA

unclassified phages

Project description:unclassified phages

| PRJNA16918 | ENA

Phages DT1 and 2972 gene expression study

2005-08-10 | GSE2476 | GEO

Photorhabdus antumapuensis strain:UCH-936

Project description:Photorhabdus antumapuensis strain:UCH-936 Genome sequencing and assembly

| PRJNA749748 | ENA

Portal Hypertension Induced Changes in Splenic Gene Expression

Project description:Splenomegaly is caused by several pathological conditions, including portal hypertension, which is most frequently caused by chronic liver disease (e.g., liver cirrhosis). The detailed mechanisms through which portal pressure induces splenomegaly and the precise pathophysiological conditions in portal hypertension-induced splenomegaly remain to be fully elucidated. We used microarrays to identify the differential gene expression underlying the portal hypertension-induced splenomegaly.

2018-11-21 | GSE113613 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data