Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Temporal patterns of microbes

ABSTRACT: Multifaceted aspects of synchrony between bacterioplankton and protists

PROVIDER: PRJEB32348 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR3674790_1.fastq.gz	Fastqsanger.gz
	ERR3674790_2.fastq.gz	Fastqsanger.gz
	ERR3674800_1.fastq.gz	Fastqsanger.gz
	ERR3674800_2.fastq.gz	Fastqsanger.gz
	ERR3674810_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 214

Similar Datasets

Temporal Analysis of the Honey Bee Microbiome Reveals Four Novel Viruses and Seasonal Prevalence of Known Viruses, Nosema, and Crithidia

2011-06-06 | GSE28235 | GEO

Temporal pattern of gene expression in the late third instar larvae and prepupae of Drosophila melanogaster

Project description:This study identifies genes that alter their expression in synchrony with the late third instar and prepupal pulses of 20E. Keywords: time course

2005-10-04 | GSE3057 | GEO

Temporal Analysis of the Honey Bee Microbiome Reveals Four Novel Viruses and Seasonal Prevalence of Known Viruses, Nosema, and Crithidia

Project description:Pathogen detection microarrays analyzing honeybee samples taken from the same hives over the course of a year, oligos correspond to specific pathogens or pathogen families of viruses, bacteria, fungi, protists, and other parasites Samples were analyzed with the E-Predict analysis package Twenty hives samples biweekly, Timepoint refers to sample collection week after start, where T01 refers to April 15, 2009. Hive refers to the specific hive sampled.

2011-06-06 | E-GEOD-28235 | biostudies-arrayexpress

Why do microbes exhibit weak biogeographic patterns?

Project description:Analysis of patterns in the distribution of taxa can provide important insights into ecological and evolutionary processes. Microbial biogeographic patterns almost always appear to be weaker than those reported for plant and animal taxa. It is as yet unclear why this is the case. Some argue that microbial diversity scales differently over space because microbial taxa are fundamentally different in their abundance, longevity and dispersal abilities. Others have argued that differences in scaling are an artifact of how we assess microbial biogeography, driven, for example, by differences in taxonomic resolution, spatial scale, sampling effort or community activity/dormancy. We tested these alternative explanations by comparing bacterial biogeographic patterns in soil to those of trees found in a forest in Gabon. Altering taxonomic resolution, excluding inactive individuals, or adjusting for differences in spatial scale were insufficient to change the rate of microbial taxonomic turnover. In contrast, we account for the differences in spatial turnover between these groups by equalizing sampling extent. Our results suggest that spatial scaling differences between microbial and plant diversity are likely not due to fundamental differences in biology, and that sampling extent should be taken into account when comparing the biogeographic patterns of microorganisms and larger organisms.

| S-EPMC5956095 | biostudies-literature

Synchrony and asynchrony between an epigenetic clock and developmental timing

Project description:Synchrony and asynchrony between an epigenetic clock and developmental timing

| PRJNA512517 | ENA

environmental microbes

Project description:Multi-Omics reveal common features between heterogeneous wastewater biosolids

| PRJNA973653 | ENA

Antibiotic Resistance Patterns in Cervical Microbes of Gilts and Sows.

Project description:Extenders for boar semen contain antibiotics, which may induce antimicrobial resistance (AMR) in inseminated females. The objective was to investigate AMR of bacteria isolated from the cervix of sows and gilts in standing heat, representing females previously exposed to antibiotics in the semen extender and non-exposed females, respectively. Cervical swabs were taken from 30 multiparous sows and 30 gilts prior to their first insemination. After culturing on agar plates, bacterial isolates were identified by Matrix-Assisted Laser Desorption/Ionization Time of Flight Mass Spectrometry and antimicrobial minimum inhibitory concentrations (MIC) were determined. Differences in antibiotic resistance between sows and gilts were analyzed by Chi-squared or Fisher's exact test. Bacteria isolated were mostly Staphylococcus spp., Streptococcus spp. and Corynebacterium spp. Higher MICs were observed for isolates from sows than from gilts. Most (>80%) Corynebacterium spp. were resistant to clindamycin; small numbers (<20%) were resistant to gentamicin, penicillin, vancomycin, ciprofloxacin and rifampicin, with no differences between gilts and sows. Corynebacterium from gilts were more often resistant to tetracycline than those from sows (25% vs. 4.17%; p = 0.04). In conclusion, bacteria from the porcine cervix showed low resistance to most antibiotics except for clindamycin, but antibacterial resistance may increase with increasing parity.

| S-EPMC8749660 | biostudies-literature

Patterns of CRISPR/Cas9 activity in plants, animals and microbes.

Project description:The CRISPR/Cas9 system and related RNA-guided endonucleases can introduce double-strand breaks (DSBs) at specific sites in the genome, allowing the generation of targeted mutations in one or more genes as well as more complex genomic rearrangements. Modifications of the canonical CRISPR/Cas9 system from Streptococcus pyogenes and the introduction of related systems from other bacteria have increased the diversity of genomic sites that can be targeted, providing greater control over the resolution of DSBs, the targeting efficiency (frequency of on-target mutations), the targeting accuracy (likelihood of off-target mutations) and the type of mutations that are induced. Although much is now known about the principles of CRISPR/Cas9 genome editing, the likelihood of different outcomes is species-dependent and there have been few comparative studies looking at the basis of such diversity. Here we critically analyse the activity of CRISPR/Cas9 and related systems in different plant species and compare the outcomes in animals and microbes to draw broad conclusions about the design principles required for effective genome editing in different organisms. These principles will be important for the commercial development of crops, farm animals, animal disease models and novel microbial strains using CRISPR/Cas9 and other genome-editing tools.

| S-EPMC5103219 | biostudies-literature

Synchrony and asynchrony between an epigenetic clock and developmental timing [450K array]

Project description:Synchrony and asynchrony between an epigenetic clock and developmental timing [450K array]

| PRJNA512520 | ENA

Synchrony and asynchrony between an epigenetic clock and developmental timing [RNA-Seq]

Project description:Synchrony and asynchrony between an epigenetic clock and developmental timing [RNA-Seq]

| PRJNA511410 | ENA