Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Piratas XIII Metagenomes

ABSTRACT: Metagenomes of the Altantic Ocean collected during the Piratas XIII expedition.

PROVIDER: PRJEB32934 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR3363700_1.fastq.gz	Fastqsanger.gz
	ERR3363700_2.fastq.gz	Fastqsanger.gz
	ERR3363710_1.fastq.gz	Fastqsanger.gz
	ERR3363710_2.fastq.gz	Fastqsanger.gz
	ERR3363720_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 54

Similar Datasets

Microbial Metaproteome from the Western Atlantic Ocean DeepDOM KN210-04 Expedition

Project description:This dataset consists of 20 metaproteomic analyses of the Western Atlantic Ocean aboard the R/V Knorr KN210-04 DeepDOM expedition in 2013. Samples were collected by McLane pumps on GFF or GF75 filters, split, and frozen until analyses. Expedition metadata and co-sampled datasets are available at: https://www.bco-dmo.org/deployment/59057

2022-05-24 | PXD034035 | Pride

Global Ocean Sampling (GOS) Expedition

Project description:Metagenomes obtained during the Global Ocean Sampling Expedition

| PRJNA208465 | ENA

Malaspina Microbial Vertical Profiles Metagenomes

Project description:Malaspina Expedition 2010 Microbial Vertical Profiles Metagenomes

| PRJEB52452 | ENA

Arctic Ocean metagenomes

Project description:Arctic Ocean metagenomes from HLY1502

| PRJEB14154 | ENA

13 Healthy Human Gut Metagenomes

Project description:Gut metagenomes collected from 13 healthy individuals

| PRJNA28117 | ENA

Arctic Ocean metagenomes metagenomic assembly

Project description:EMG produced TPA metagenomics assembly of the Arctic Ocean metagenomes from HLY1502 (Arctic Ocean metagenomes) data set

| PRJEB22522 | ENA

marine metagenome

Project description:16S rRNA from Coco's Island, Costa Rica collected during the Global Ocean Sampling Expedition

| PRJNA19735 | ENA

Metagenomes

Project description:Metagenomes

| PRJEB12083 | ENA

metagenomes

Project description:Metagenomes

| PRJNA377521 | ENA

Single-cell alternative splicing analysis with Expedition reveals splicing dynamics during neuron differentiation

Project description:Alternative splicing (AS) generates isoform diversity critical for cellular identity and homeostasis, yet characterization of this diversity in single cells remains limited. We developed Expedition, a computational framework to categorize and visualize the heterogeneity of AS from single-cell transcriptomes. Expedition consists of (i) outrigger, a de novo splice graph transversal algorithm to detect AS from single cell RNA-seq; (ii) anchor, a Bayesian approach to assign splicing modalities and (iii) bonvoyage, using non-negative matrix factorization to visualize modality changes. By applying Expedition to single iPSCs undergoing neuron differentiation, we discover that 25% of AS exons exhibit bimodality and are flanked by longer and more conserved introns harboring distinct cis-regulatory motifs. Bimodal exons are highly dynamic during cellular transitions, preserve translatability, enriched in recently emerged genes and have conserved AS in mammals. Applying Expedition (http://github.com/YeoLab/Expedition) in single cells redefines our estimates and understanding of AS in evolution and biology.

2017-07-12 | GSE85908 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data